ViromeScan specifications


Unique identifier OMICS_11254
Name ViromeScan
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Input files should be single-end or paired-end reads in fastq format (for paired-end reads compressed files in gzip, bzip2 and zip formats are also accepted) retrieved from shotgun sequencing or RNA-seq.
Operating system Unix/Linux, Mac OS
Programming languages Java, Perl, R, Shell (Bash)
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Stable
Requirements Bowtie2, Bmtagger, Picard tools
Maintained Yes


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  • person_outline Simone Rampelli <>

Publication for ViromeScan

ViromeScan institution(s)
Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy

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