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Protocols

VirtualBox specifications

Information


Unique identifier OMICS_01208
Name VirtualBox
Software type Framework/Library
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Parallelization MapReduce
License GNU General Public License version 2.0
Computer skills Medium
Version 5.2.16
Stability Stable
Source code URL https://www.virtualbox.org/wiki/Downloads
High performance computing Yes
Maintained Yes

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Documentation


VirtualBox citations

 (22)
library_books

A posteriori metadata from automated provenance tracking: integration of AiiDA and TCOD

2017
J Cheminform
PMCID: 5686034
PMID: 29138947
DOI: 10.1186/s13321-017-0242-y

[…] also supplemented with the source code. In our experience, this representation is sufficient at the moment and can be easily extended in the future, for instance using virtual machines (e.g. QEMU [], VirtualBox [], VMware [] or similar techniques), or Docker [], that has rapidly become a widespread tool to reproduce a given computational environment. The presence of full process provenance informa […]

call_split

Methods for enhancing the reproducibility of biomedical research findings using electronic health records

2017
BioData Min
PMCID: 5594436
PMID: 28912836
DOI: 10.1186/s13040-017-0151-7
call_split See protocol

[…] led using a library that is no longer available in newer versions of an operating system. These issues can potentially be mitigated through the use of virtualization []. Virtual machines (e.g. Oracle VirtualBox [], VMware []) are essentially containers that can encapsulate a snapshot of the OS, data and analytical pipelines in a single binary file. This can be done irrespective of the “host” opera […]

library_books

CloVR Comparative: automated, cloud enabled comparative microbial genome sequence analysis pipeline

2017
BMC Genomics
PMCID: 5408420
PMID: 28449639
DOI: 10.1186/s12864-017-3717-3

[…] rictions to use by non-academics: No Project name: CloVR Project home page: http://www.clovr.org Operating system(s): Platform Independent Programming language: Python Other requirements: VMware or VirtualBox virtual machine players License: BSD Any restrictions to use by non-academics: No […]

call_split

NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR based metabolomics

2017
Metabolomics
PMCID: 5313591
PMID: 28261014
DOI: 10.1007/s11306-017-1178-y
call_split See protocol

[…] er to save users the trouble of installing the software. In addition, virtual appliances of NMRProcFlow compliant with the two major virtualization platforms (VMware http://www.vmware.com/ and Oracle VirtualBox https://www.virtualbox.org/) are available for a local setup thus ensuring security of confidential data such as clinical data. […]

call_split

Software based analysis of bacteriophage genomes, physical ends, and packaging strategies

2016
BMC Genomics
PMCID: 5000459
PMID: 27561606
DOI: 10.1186/s12864-016-3018-2
call_split See protocol

[…] wiki) and gain access to the Mycobacteriophage database managed by Graham Hatfull at the University of Pittsburg and Steve Cresawn at James Madison University. The virtual hard drive can be run using VirtualBox (www.virutalbox.org) or other virtualization software. At BYU, Phamerator is accessible in the Windows environment by forwarding an X11 window over SSH from a Linux virtual machine (VM) run […]

call_split

Integrative NMR for biomolecular research

2016
J Biomol NMR
PMCID: 4861749
PMID: 27023095
DOI: 10.1007/s10858-016-0029-x
call_split See protocol

[…] grative NMR available on a virtual machine. An ISO-formatted 64-bit disk image of Ubuntu MATE 15.04 was downloaded from the Ubuntu MATE web page (http://ubuntu-mate.org) and installed in an ORACLE VM VirtualBox (http://www.virtualbox.org). The software components of Integrative NMR were installed and optimized on this virtual machine. Then, the virtual disk image was exported to Open Virtualizatio […]

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