VirulenceFinder protocols

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description
VirulenceFinder computational protocol

VirulenceFinder specifications

Information


Unique identifier OMICS_17862
Name VirulenceFinder
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.5
Stability Stable
Maintained Yes

Maintainer


  • person_outline Katrine Grimstrup Joensen <>

Additional information


(Joensen et al., 2014) Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli. Journal of Clinical Microbiology. http://jcm.asm.org/content/52/5/1501.short

VirulenceFinder IN pipeline

2015
PMCID: 4440953
PMID: 25999573
DOI: 10.1128/genomeA.00480-15

[…] systems. although prophage genes were detected by phast (20), no complete prophage is present., no known toxins were identified in the coding sequence of s. thermophilus smq-301 by the web server virulencefinder (21) or by comparing the protein sequences with the vfdb (22) and dbeth (23) toxin databases using blastp (24). finally, no known antibiotic resistance genes were found in the genome […]

VirulenceFinder institution(s)
National Food Institute, Division for Epidemiology and Microbial Genomics, Technical University of Denmark, Kongens Lyngby, Denmark; Department of Microbiology and Infection Control, Statens Serum Institut, Copenhagen, Denmark; Center for Biological Sequence Analysis, Department of System Biology, Technical University of Denmark, Kongens Lyngby, Denmark
VirulenceFinder funding source(s)
This work was supported by the Center for Genomic Epidemiology grant 09 – 067103/DSF from the Danish Council for Strategic Research.

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