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VirulentPred

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Serves as a bacterial virulent protein prediction method which is based on bi-layer cascade Support Vector Machine (SVM). VirulentPred works with different individual protein sequence features like amino acid composition, dipeptide composition, higher order dipeptide composition and Position Specific Iterated BLAST (PSI-BLAST) generated Position Specific Scoring Matrices (PSSM) This tool can classify bacterial virulent sequences from non-virulent proteins.

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VirulentPred classification

VirulentPred specifications

Interface:
Web user interface
Input data:
A protein sequence.
Programming languages:
Perl, Other
Stability:
Stable
Restrictions to use:
None
Input format:
FASTA format
Computer skills:
Basic
Maintained:
Yes

VirulentPred support

Maintainer

  • Aarti Garg <>

Credits

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Publications

Institution(s)

Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Marg, New Delhi, India

Funding source(s)

This work was supported by the World Health Organization, Tropical Disease Research (WHO/TDR).

Link to literature

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