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VirusMINT specifications

Information


Unique identifier OMICS_01909
Name VirusMINT
Restrictions to use None
Maintained No

Taxon


  • Primates
    • Homo sapiens
  • Viruses
    • Hepatitis B virus
    • Hepatitis C virus genotype 2
    • Hepatitis C virus genotype 3
    • Hepatitis C virus genotype 4
    • Human immunodeficiency virus 1
    • Human immunodeficiency virus 2

Publication for VirusMINT

VirusMINT citations

 (6)
library_books

A review on computational systems biology of pathogen–host interactions

2015
Front Microbiol
PMCID: 4391036
PMID: 25914674
DOI: 10.3389/fmicb.2015.00235

[…] ased visualizations of the PHI networks (). The recently developed tool, VirusMentha is another virus-virus and virus–host protein interaction resource. VirusMentha is an extension of a previous tool VirusMINT (). VirusMentha is the most comprehensive viral PHI data source without limitation with respect to virus species or host organisms. The tool offers a graphical representation option for vira […]

library_books

Prediction of host pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs

2015
BMC Bioinformatics
PMCID: 4456996
PMID: 25887594
DOI: 10.1186/s12859-015-0535-y

[…] uberculosis included VisANT, Reactome, InteroPorc, IntAct, DIP, MPIDB, MINT, whereas for Homo sapiens, IntAct, HPRD, MINT, Reactome, DIP were included. We also attempted to use more databases such as virusmint [], virhostnet [], and STRING [], while the number of PPIs would not be increased due to the overlaps and redundancy among the databases. […]

library_books

Proteomics Analysis of the Non Muscle Myosin Heavy Chain IIa Enriched Actin Myosin Complex Reveals Multiple Functions within the Podocyte

2014
PLoS One
PMCID: 4065073
PMID: 24949636
DOI: 10.1371/journal.pone.0100660

[…] work as a whole.Enrichment analysis of the two lists was performed with Lists2Networks and Network2Canvas to compute enrichment for WikiPathways , BioCarta pathways, Reactome , PPI hubs, KEA , GO , VirusMINT , and structural domains from PFAM and InterPro . These tools use the Fisher exact test and the gene-set libraries to rank terms based on overlap of the identified protein subset with gene- […]

library_books

Multi Edge Gene Set Networks Reveal Novel Insights into Global Relationships between Biological Themes

2012
PLoS One
PMCID: 3441533
PMID: 23028852
DOI: 10.1371/journal.pone.0045211

[…] gene set networks corresponds to a collection of substrates of either a kinase or phosphatase as annotated in the literature curated databases KEGG Pathway, HPRD, and PhosphoSite Plus. We constructed VirusMINT gene set networks where each node representing a particular viral strain consisted of human proteins known to physically interact with proteins from the respective virus.KEGG Pathway (1556 e […]

library_books

Large Scale Genotype Comparison of Human Papillomavirus E2 Host Interaction Networks Provides New Insights for E2 Molecular Functions

2012
PLoS Pathog
PMCID: 3386243
PMID: 22761572
DOI: 10.1371/journal.ppat.1002761

[…] Literature curated interaction (LCI) involving the E2 proteins were extracted from the VirHostNet , virusMINT and PubMed databases. Interaction data analyses were performed using the R statistics package. Raw NLR interaction data were separated into categories in order to minimize the dispersion of […]

library_books

Concept and application of a computational vaccinology workflow

2010
Immunome Res
PMCID: 2981879
PMID: 21067549
DOI: 10.1186/1745-7580-6-S2-S7

[…] -human protein interaction, we extracted protein interaction data provided by Fossum et al. [] and Calderwood et al. []. These given records were further enriched by interaction data specified in the virusMINT database []. While physical interactions are of high value, more complex dependencies may exist between two factors, for example by indirect interaction or genetic co-regulation. For represe […]

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VirusMINT institution(s)
Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, Rome, Italy

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