VirusSeq statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Virus detection chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

VirusSeq specifications

Information


Unique identifier OMICS_00227
Name VirusSeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Publication for VirusSeq

VirusSeq in publications

 (11)
PMCID: 5924777
PMID: 29740407
DOI: 10.3389/fmicb.2018.00749

[…] rins, slim, surpi, taxy-pro, “unknown pathogens from mixed clinical samples,” vip and viromescan), or even days (5 workflows: exhaustive iterative assembly, viralfusionseq, virfind, virusfinder and virusseq)., for 17 workflows for which these data were available, we looked for correlations by plotting performance scores against the analysis steps included (figure ). workflows that included […]

PMCID: 5818640
PMID: 29497257
DOI: 10.6026/97320630014031

[…] two hours [, ]. the rins is an intersection-based pathogen detection workflow that utilizes a user-reference genome set for the identification of non-human sequences in deep sequencing datasets. virusseq is an algorithmic method that is also used for detecting known viruses and their integration sites in the human genome using ngs data. virusseq was developed using perl platform […]

PMCID: 5719570
PMID: 29212479
DOI: 10.1186/s12916-017-0973-7

[…] virus-induced host genome instability and viral genome variability [, ]. it has been shown that virusfinder performs better than other state-of-the-art virus integration detection pipelines such as virusseq [] and virusfusionseq [] in terms of both accuracy and time efficiency []. our virus integration detection pipeline was based on virusfinder, with several modifications. firstly, […]

PMCID: 5689691
PMID: 29156801
DOI: 10.18632/oncotarget.21174

[…] we described previously [, ]. we stained the rppa slides with 305 unique antibodies (), which were analyzed as we previously described []., for hpv detection and integration analysis, we applied the virusseq pipeline previously developed in the department of bioinformatics and computational biology at the university of texas md anderson cancer center []. the hpv detection analysis began […]

PMCID: 5590820
PMID: 28886030
DOI: 10.1371/journal.pone.0183606

[…] included in the study (table a in ). choice of adjacent control tissue from same patient was intentional to minimize inter-individual differences in tobacco exposure and the affected tissue site., virusseq algorithm[], which uses subtraction method to detect viruses and integration sites, was applied to identify patients with or without infection of any virus such as hbv, hcv, hiv including […]


To access a full list of publications, you will need to upgrade to our premium service.

VirusSeq institution(s)
Department of Genitourinary Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA

VirusSeq reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review VirusSeq