VirVarSeq specifications

Unique identifier:
OMICS_05534
Software type:
Pipeline/Workflow
Restrictions to use:
None
Biological technology:
Illumina
Computer skills:
Advanced
Requirements:
BWA, Fortran, R, Perl, Perl modules
Alternative name:
VirTools
Interface:
Command line interface
Input format:
FASTQ
Operating system:
Unix/Linux
Stability:
Stable
Maintained:
Yes

Subtools

  • Q-cpileup
  • Viruses

versioning

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VirVarSeq distribution

download

VirVarSeq support

Maintainer

  • Bie Verbist <>

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Publications

Institution(s)

Department of Mathematical Modeling, Statistics and Bioinformatics, Ghent University, Gent, Janssen R&D, Janssen Pharmaceutical Companies of Johnson & Johnson, Beerse, Applied Mathematics, Informatics and Statistics, Ghent University, Gent, Belgium; University of Wollongong, National Institute for Applied Statistics Research Australia (NIASRA), School of Mathematics and Applied Statistics, NSW, Australia

Funding source(s)

Partly supported by Institute for the Promotion of Innovation by Science and Technology in Flanders (IWT) who provided a Baekeland mandatory [BM100679], IAP research network grant [no. P7/06] of the Belgian government (Belgian Science Policy) and by Multidisciplinary Research Partnership Bioinformatics: From Nucleotides to Networks Project [01MR0310W] of Ghent University.

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