VirVarSeq specifications

Information


Unique identifier OMICS_05534
Name VirVarSeq
Alternative name VirTools
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTQ
Biological technology Illumina
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements BWA, Fortran, R, Perl, Perl modules
Maintained Yes

Subtool


  • Q-cpileup

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Versioning


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Maintainer


  • person_outline Bie Verbist <>

Publication for VirVarSeq

VirVarSeq institution(s)
Department of Mathematical Modeling, Statistics and Bioinformatics, Ghent University, Gent, Janssen R&D, Janssen Pharmaceutical Companies of Johnson & Johnson, Beerse, Applied Mathematics, Informatics and Statistics, Ghent University, Gent, Belgium; University of Wollongong, National Institute for Applied Statistics Research Australia (NIASRA), School of Mathematics and Applied Statistics, NSW, Australia
VirVarSeq funding source(s)
Partly supported by Institute for the Promotion of Innovation by Science and Technology in Flanders (IWT) who provided a Baekeland mandatory [BM100679], IAP research network grant [no. P7/06] of the Belgian government (Belgian Science Policy) and by Multidisciplinary Research Partnership Bioinformatics: From Nucleotides to Networks Project [01MR0310W] of Ghent University.

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