VisHiC specifications


Unique identifier OMICS_07681
Name VisHiC
Alternative names Visualization of Hierarchical Clustering, VisHiC2
Interface Web user interface
Restrictions to use None
Input data A gene expression matrix.
Input format TSV,Gene Expression Omnibus SOFT
Output data A compact gene expression matrix represented as a heatmap dendrogram.
Computer skills Basic
Stability No
Maintained No


This tool is not available anymore.

Publication for Visualization of Hierarchical Clustering

VisHiC citation


Visualization of proteomics data using R and Bioconductor

PMCID: 4510819
PMID: 25690415
DOI: 10.1002/pmic.201400392

[…] pie charts, and they should be replaced by bar plots or dot plots, which are easily produced with the dotchart function.Heat maps can easily be produced with the image function. Dendrograms, i.e. the visualization of hierarchical clustering, can be produced with the hclust function and visualized with the specific plot method. The dendextend package [] offers a set of extensions for visualizing an […]

VisHiC institution(s)
Institute of Computer Science, University of Tartu, Tartu, Estonia; Estonian Biocentre, University of Tartu, Tartu, Estonia; Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia; Quretec, Tartu, Estonia
VisHiC funding source(s)
Supported by EU FP6 grants (ENFIN LSHG-CT-2005-518254 and COBRED LSHB-CT-2007-037730).

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