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|Interface||Command line interface|
|Restrictions to use||None|
|Operating system||Unix/Linux, Mac OS, Windows|
methods, stats, utils, grDevices, rmarkdown, knitr, igraph, htmlwidgets, shiny, magrittr, rpart, htmltools, colourpicker, jsonlite, ggraph, R(≥3.0), webshot, shinyWidgets, sparkline, flashClust
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- person_outline Benoit Thieurmel
PIVOT: platform for interactive analysis and visualization of transcriptomics data
[…] Map, PIVOT automatically re-runs analyses and updates parameter choices when needed. Thus, a user can easily compare results of a workflow across derived datasets. The data map is generated with the visNetwork package  and can be directly edited, so that users can rename nodes, add notes, or delete data subsets and analysis reports that are no longer useful. The full data history is also presen […]
Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria
[…] dependency relationships between phyletic patterns of sRNAs and coding gene elements (5’UTR and CDS) of L. monocytogenes EGD-e. Graph representations were built using the ‘igraph’, version 1.0.1 , ‘visNetwork’, version 1.0.3 , and ‘Shiny’, version 1.0.1  R packages. […]
Digging into the low molecular weight peptidome with the OligoNet web server
[…] first converted to the JSON format and requests to DECOMP are performed using the Rcurl library. The directed PDN is built as an igraph object based on all identified UAAC signals. OligoNet uses the visNetwork package for the network visualization. The KEGGREST library is used for the mass annotation in the KEGG database and for the visualization of metabolic pathways. The client-side interface w […]
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