visNetwork statistics

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Citations per year

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Popular tool citations

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Associated diseases

Associated diseases

visNetwork specifications

Information


Unique identifier OMICS_16448
Name visNetwork
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License MIT License
Computer skills Advanced
Version 2.0.4
Stability Stable
Requirements
methods, stats, utils, grDevices, rmarkdown, knitr, igraph, htmlwidgets, shiny, magrittr, rpart, htmltools, colourpicker, jsonlite, ggraph, R(≥3.0), webshot, shinyWidgets, sparkline, flashClust
Maintained Yes

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Documentation


Maintainer


  • person_outline Benoit Thieurmel <>

visNetwork in publications

 (2)
PMCID: 5689173
PMID: 29145803
DOI: 10.1186/s12864-017-4242-0

[…] relationships between phyletic patterns of srnas and coding gene elements (5’utr and cds) of l. monocytogenes egd-e. graph representations were built using the ‘igraph’, version 1.0.1 [], ‘visnetwork’, version 1.0.3 [], and ‘shiny’, version 1.0.1 [] r packages., functional enrichment test was performed using l. monocytogenes egd-e gene cog ontologies [] and computed using a fisher’s […]

PMCID: 5601033
PMID: 28916823
DOI: 10.1038/s41598-017-11786-w

[…] first converted to the json format and requests to decomp are performed using the rcurl library. the directed pdn is built as an igraph object based on all identified uaac signals. oligonet uses the visnetwork package for the network visualization. the keggrest library is used for the mass annotation in the kegg database and for the visualization of metabolic pathways. the client-side interface […]


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