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Visual annotation display VLAD

Online

Determines functional themes in sets of genes based on their ontology term annotations. VLAD is highly configurable and can be used with several ontology and annotation combination. The software generates a list of ontology terms with related additional information and can be run for several gene sets simultaneously. It was developed for working especially for term enrichment/depletion analysis in mouse genes.

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VLAD forum

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VLAD classification

VLAD specifications

Interface:
Web user interface
Input data:
A set of objects and optionally a customized data set of Gene Ontology, a personal ontology.
Output data:
A graphical and tabular representations of the ontology terms associated with the user-supplied gene list (i.e., the query set) and the calculated significance scores.
Computer skills:
Basic
Stability:
Stable
Restrictions to use:
None
Input format:
GO,OBO
Output format:
HTML,XLS,TSV
Version:
1.6.0
Maintained:
Yes

VLAD distribution

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No versioning.

VLAD support

Maintainers

  • Carol J. Bult <>
  • Joel Richardson <>

Credits

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Publications

Institution(s)

Mouse Genome Informatics (MGI) Database Consortium, The Jackson Laboratory, Bar Harbor, ME, USA

Funding source(s)

Supported, in part, by NIH HG00330-P1

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