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Sequence annotation visualization software tools | Protein structure data analysis

Modern techniques have produced many sequence annotation databases and protein structure portals, but these Web resources are rarely integrated in ways that permit straightforward exploration of protein functional residues and their…
Aquaria
Web

Aquaria

A publicly available web resource that streamlines and simplifies the process…

A publicly available web resource that streamlines and simplifies the process of gleaning insight from protein structures. In contrast to most molecular graphics tools, the user interface of Aquaria…

ProSAT
Web

ProSAT Protein Structure Annotation Tool-plus

A web server for mapping protein sequence annotations onto a protein structure…

A web server for mapping protein sequence annotations onto a protein structure and visualizing them simultaneously with the structure. ProSAT+ incorporates many of the features of the preceding…

NAOMInova
Desktop

NAOMInova

Analyzes interactively geometric preferences of noncovalent interactions around…

Analyzes interactively geometric preferences of noncovalent interactions around user-defined substructures on any user-selected data. NAOMInova is an application that allows the analysis of potential…

Molstack
Web

Molstack

Provides a framework to support electron density maps and their…

Provides a framework to support electron density maps and their interpretations. Molstack is a cloud-based tool that allows the visualization and analysis of multiple sets of coordinate and electron…

Web3DMol
Web

Web3DMol

Represents a web-based protein structure visualization tool. Web3DMol provides…

Represents a web-based protein structure visualization tool. Web3DMol provides interactive 3D presentation of protein structures. It permits users to create graphical results easily. To reveal the…

ActiveICM
Desktop

ActiveICM

A package to view and display 3D ICM graphical slides and animations…

A package to view and display 3D ICM graphical slides and animations interactively inside Microsoft PowerPoint and web browsers such as Internet Explorer, Safari and Mozilla Firefox. Inside a single…

PyMOL
Desktop

PyMOL

Generates high-quality publication-ready molecular graphics images and…

Generates high-quality publication-ready molecular graphics images and animations. PyMOL is a molecular graphics system targeted at medium to large biomolecules like proteins. It excels at 3D…

Gabedit
Desktop

Gabedit

A freeware graphical user interface that offers preprocessing and…

A freeware graphical user interface that offers preprocessing and postprocessing adapted (to date) to nine computational chemistry software packages. Gabedit includes tools for editing, displaying,…

CueMol
Desktop

CueMol

A program for the macromolecular structure visualization. CueMol's aims…

A program for the macromolecular structure visualization. CueMol's aims are to visualize and create the publication-quality images of the macromolecular structures with user-friendly interfaces.…

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