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VisualOMP specifications

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Unique identifier OMICS_03942
Name VisualOMP
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

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VisualOMP citations

 (5)
library_books

Rapid detection and strain typing of Chlamydia trachomatis using a highly multiplexed microfluidic PCR assay

2017
PMCID: 5451082
PMID: 28562672
DOI: 10.1371/journal.pone.0178653

[…] aligned by geneious and by clustalw algorithms through geneious 7.1 software (http://www.geneious.com) []. primer thermodynamic properties and their compatibility and specificity were verified using visualomp software version 7.8.42.0 (http://www.dnasoftware.com/). primers for all loci and all genotypic variants were designed such that the amplicons were distinguishable by size. data […]

library_books

Real time PCR probe optimization using design of experiments approach

2015
PMCID: 4827641
PMID: 27077046
DOI: 10.1016/j.bdq.2015.12.002

[…] agent (roche, germany, cat. no. 10109495001)., all primers, mp and ur sequence designs, and reference hydrolysis probe (hp) sequence designs are listed in . all sequences were designed using visualomp™ (dna software®, usa, version 7.8.42.0) , , ., the qiagen quantitect multiplex rt-pcr nr kit (qiagen, germany, cat. no. 204843) was used for one-step reverse transcription–amplification […]

library_books

Guidelines for Optimisation of a Multiplex Oligonucleotide Ligation PCR for Characterisation of Microbial Pathogens in a Microsphere Suspension Array

2015
PMCID: 4332752
PMID: 25705689
DOI: 10.1155/2015/790170

[…] and at 3′ the 20 bp reverse-complement of a t3 primer. the downstream probes are 5′ phosphorylated to enable ligation to the upstream probe by the dna ligase. all probe pairs were designed with visualomp (dna software) so that the complex of target-specific dna, upstream probe, and downstream probe had an effective change of gibb's free energy (eff δg°) of −31.15 to −25.13 kcal mol−1 […]

library_books

Dilute ‘N’ Go dideoxy sequencing of all DNA strands generated in multiplex LATE PCR assays

2010
PMCID: 2887968
PMID: 20189962
DOI: 10.1093/nar/gkq111

[…] of the reaction, half of the target is bound to that primer or blk to form a heterodimer. the tm of each primer or blk can be obtained from the corresponding binding curve to its target simulated by visualomp v7 (dna software, ca) as shown in b. the simulation is performed under sequencing conditions with all target concentration set as 2.5 nm, all xp concentrations set at 25 nm and all blk […]

library_books

An optimized procedure for the design and evaluation of Ecotilling assays

2008
PMCID: 2586031
PMID: 18973671
DOI: 10.1186/1471-2164-9-510

[…] nti (advance 10; invitrogen corporation, carlsbad, ca, usa; ), the ensembl database , the genomatix suite (genomatix software gmbh, munich, germany; ) and some software for primer design such as visualomp (dna software, ann arbor, mi, usa) or primer3 ., the data analysis procedure includes three software tools: vector nti, gelbuddy ([]; ) and sequencing analysis software solutions […]


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