VitaPad statistics

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Citations per year

Number of citations per year for the bioinformatics software tool VitaPad
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Tool usage distribution map

This map represents all the scientific publications referring to VitaPad per scientific context
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VitaPad specifications

Information


Unique identifier OMICS_15572
Name VitaPad
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU Lesser General Public License version 2.1
Computer skills Medium
Version 0.6.1
Stability Alpha
Maintained Yes

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Maintainer


  • person_outline Matt Holford

Publication for VitaPad

VitaPad citations

 (3)
library_books

A taxonomy of visualization tasks for the analysis of biological pathway data

2017
BMC Bioinformatics
PMCID: 5333192
PMID: 28251869
DOI: 10.1186/s12859-016-1443-5

[…] lization techniques and applications. Here we look at tools that exemplify typical visualization strategies, including: ChiBe [], Entourage [], Reactome Pathway Browser [], VisAnt [], MetaViz [], and VitaPad [].Node-link diagrams are the nearly-universal choice of visual representation used in existing applications (exceptions to this rule include BioFabric []). Cytoscape [] is a popular graph vis […]

library_books

Extended LineSets: a visualization technique for the interactive inspection of biological pathways

2015
BMC Proc
PMCID: 4547339
PMID: 26361500
DOI: 10.1186/1753-6561-9-S6-S4

[…] majority of these pathway visualization tools use conventional graph representations, many of them decorate the node-link diagrams with experimental data or other additional information. For example, VitaPad allows the user to incorporate microarray data into pathways, Entourage enables the integration of experimental data, and VisAnt permits the user to create and view annotations of nodes within […]

library_books

State of the Art in Silico Tools for the Study of Signaling Pathways in Cancer

2012
Int J Mol Sci
PMCID: 3397482
PMID: 22837650
DOI: 10.3390/ijms13066561

[…] cessor [], PathMAPA [], Cytoscape [], and PathwayMine [] use Fisher’s exact test. MetaCore uses a hypergeometric model, while ArrayXPath [] offers both Fisher’s exact test and a false discovery rate. VitaPad [] and Pathway Studio [] focus on visualization approaches alone and do not offer any detailed analyses. Finally, the impact analysis method, which is implemented as a Web-based tool, and Path […]


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VitaPad institution(s)
Center for Statistical Genomics and Proteomics, Yale University, New Haven, CT, USA; Center for Medical Informatics, Yale University, New Haven, CT, USA; Division of Biostatistics, Yale University, New Haven, CT, USA
VitaPad funding source(s)
This work was supported in part by NIH grants GM 59507 and ES10867 and NSF grant DMS 0241160.

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