VitaPad statistics

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VitaPad specifications


Unique identifier OMICS_15572
Name VitaPad
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU Lesser General Public License version 2.1
Computer skills Medium
Version 0.6.1
Stability Alpha
Maintained Yes



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  • person_outline Matt Holford <>

Publication for VitaPad

VitaPad in publications

PMCID: 5333192
PMID: 28251869
DOI: 10.1186/s12859-016-1443-5

[…] techniques and applications. here we look at tools that exemplify typical visualization strategies, including: chibe [], entourage [], reactome pathway browser [], visant [], metaviz [], and vitapad []., node-link diagrams are the nearly-universal choice of visual representation used in existing applications (exceptions to this rule include biofabric []). cytoscape [] is a popular graph […]

PMCID: 3397482
PMID: 22837650
DOI: 10.3390/ijms13066561

[…] [], pathmapa [], cytoscape [], and pathwaymine [] use fisher’s exact test. metacore uses a hypergeometric model, while arrayxpath [] offers both fisher’s exact test and a false discovery rate. vitapad [] and pathway studio [] focus on visualization approaches alone and do not offer any detailed analyses. finally, the impact analysis method, which is implemented as a web-based tool, […]

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VitaPad institution(s)
Center for Statistical Genomics and Proteomics, Yale University, New Haven, CT, USA; Center for Medical Informatics, Yale University, New Haven, CT, USA; Division of Biostatistics, Yale University, New Haven, CT, USA
VitaPad funding source(s)
This work was supported in part by NIH grants GM 59507 and ES10867 and NSF grant DMS 0241160.

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