ViVar pipeline

ViVar specifications

Information


Unique identifier OMICS_07111
Name ViVar
Alternative name arrayCGHbase
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Filip Pattyn <>
  • person_outline Piet Robbrecht <>
  • person_outline Evi Michels <>
  • person_outline Bjorn Menten <>
  • person_outline Katleen De Preter <>

Publications for ViVar

ViVar IN pipeline

2016
PMCID: 4758057
PMID: 26887858
DOI: 10.1038/srep21307

[…] polymorphism chip analysis using the humancytosnp-12 beadchip platform (illumina, san diego, ca). identity-by-descent regions (>1 mb) were identified using plink software55 integrated in vivar56. resulting homozygous regions were ranked according to their length and number of consecutive homozygous single-nucleotide polymorphisms, as described by coppieters et al57., primers […]

ViVar institution(s)
Center for Medical Genetics, Faculty of Medicine and Health Sciences, Ghent University, Gent, Belgium; Department of Medical Genetics, University Medical Center Utrecht, Utrecht, Netherlands; BioBix, Faculty of Bioscience Engineering, Ghent University, Gent, Belgium

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