Vocabulon statistics

info info

Citations per year


Popular tool citations

chevron_left Motif discovery chevron_right

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

Vocabulon specifications


Unique identifier OMICS_09395
Name Vocabulon
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License Academic Free License version 3.0
Computer skills Advanced
Stability Stable
Maintained No


No version available

Publication for Vocabulon

Vocabulon citations


Using Temporal Correlation in Factor Analysis for Reconstructing Transcription Factor Activities

EURASIP J Bioinform Syst Biol
PMCID: 3171388
PMID: 18604288
DOI: 10.1155/2008/172840

[…] networks, limit our ability to assign factors to known tfs. sabatti and james. [] constrain the factors to known tfs by assigning a priori loadings matrix with a large number of zeros based on the vocabulon algorithm []. here, we aim to see if the fa algorithm is also able to reconstruct the activity profiles without any prior information. to assess how well profiles are reconstructed, […]


Factor analysis for gene regulatory networks and transcription factor activity profiles

BMC Bioinformatics
PMCID: 1821042
PMID: 17319944
DOI: 10.1186/1471-2105-8-61

[…] the factor loadings matrix at each step of the gibbs sampler and to facilitate the reconstruction process, they set a large number of entries to zero based on information obtained from the vocabulon algorithm []. this algorithm scans dna sequences for multiple motifs and associates with each transcription factor a probability of binding to a specific site. this approach resembles […]

Want to access the full list of citations?
Vocabulon institution(s)
Departments of Human Genetics and Statistics, UCLA Los Angeles, CA, USA; Department of Chemical Engineering, UCLA Los Angeles, CA, USA; Department of Biomathematics, UCLA Los Angeles, CA, USA

Vocabulon reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Vocabulon