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vocBinBase specifications


Unique identifier OMICS_04806
Name vocBinBase
Restrictions to use None
Maintained Yes

Publication for vocBinBase

vocBinBase citations


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] re interesting freely accessible plant-specific GC-MS libraries include the Golm Metabolome Database [], with a total of 26 590 spectra and 4663 analytes at the time this article was written, and the VocBinBase [], which included 1537 unique mass spectra at the time this article was written. Both of these databases can be downloaded and integrated to processing tools for metabolite annotation base […]


Unbiased profiling of volatile organic compounds in the headspace of Allium plants using an in tube extraction device

BMC Res Notes
PMCID: 4772445
PMID: 26928722
DOI: 10.1186/s13104-016-1942-5

[…] use of well-documented libraries such as NIST/EPA/NIH mass spectral library (NIST-L) [], Adams library (Ad-L) [], the terpenoids library (Te-L; http://www.massfinder.com/wiki/Terpenoids_Library), and VocBinbase (Vo) [], which contain mass spectral and retention index (RI) information of compounds that can be analyzed by GC–MS. Furthermore, several alignment tools such as AMDIS [], ChromA [], H-MCR […]


Development and Mining of a Volatile Organic Compound Database

Biomed Res Int
PMCID: 4606137
PMID: 26495281
DOI: 10.1155/2015/139254

[…] les only. Flavornet [] features compounds identified in experiments employing gas chromatography olfactometry (GC-O) analysis, and Pherobase [] is focused on insect pheromones and semiochemicals. The vocBinBase [] is a mass spectral database for volatiles which can allow for tracking and identification of volatile compounds in complex mixtures. None of these databases provide information on biolog […]


Development of a Direct Headspace Collection Method from Arabidopsis Seedlings Using HS SPME GC TOF MS Analysis

PMCID: 3901263
PMID: 24957989
DOI: 10.3390/metabo3020223

[…] idopsis seedlings grown under the two conditions. We obtained 263 peaks and their mass spectra by performing HS-SPME-GC-TOF-MS analysis. A total of 69 peaks were annotated as known VOCs or peaks with VocBinBase IDs (). To find the VOCs that contributed to differences between the VOC profiles of samples harvested from MS and those from water, bidirectional orthogonal projection onto latent structur […]


Recent Progress in the Development of Metabolome Databases for Plant Systems Biology

Front Plant Sci
PMCID: 3616245
PMID: 23577015
DOI: 10.3389/fpls.2013.00073

[…] BinBase are a Laboratory Information Management System (LIMS)/database system for automated metabolite annotation and mass spectra, respectively. The Adams library (Adams, ), Terpenoids Library, and VocBinBase (Skogerson et al., ) are GC-specific MSRI libraries for volatile compounds. The former two are commercially available, while the VocBinBase database is freely available for their provisiona […]

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vocBinBase institution(s)
Genome Center, University of California, Davis, CA, USA

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