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Publication for vocBinBase
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics
[…] re interesting freely accessible plant-specific GC-MS libraries include the Golm Metabolome Database , with a total of 26 590 spectra and 4663 analytes at the time this article was written, and the VocBinBase , which included 1537 unique mass spectra at the time this article was written. Both of these databases can be downloaded and integrated to processing tools for metabolite annotation base […]
Unbiased profiling of volatile organic compounds in the headspace of Allium plants using an in tube extraction device
[…] use of well-documented libraries such as NIST/EPA/NIH mass spectral library (NIST-L) , Adams library (Ad-L) , the terpenoids library (Te-L; http://www.massfinder.com/wiki/Terpenoids_Library), and VocBinbase (Vo) , which contain mass spectral and retention index (RI) information of compounds that can be analyzed by GC–MS. Furthermore, several alignment tools such as AMDIS , ChromA , H-MCR […]
Development and Mining of a Volatile Organic Compound Database
[…] les only. Flavornet  features compounds identified in experiments employing gas chromatography olfactometry (GC-O) analysis, and Pherobase  is focused on insect pheromones and semiochemicals. The vocBinBase  is a mass spectral database for volatiles which can allow for tracking and identification of volatile compounds in complex mixtures. None of these databases provide information on biolog […]
Development of a Direct Headspace Collection Method from Arabidopsis Seedlings Using HS SPME GC TOF MS Analysis
[…] idopsis seedlings grown under the two conditions. We obtained 263 peaks and their mass spectra by performing HS-SPME-GC-TOF-MS analysis. A total of 69 peaks were annotated as known VOCs or peaks with VocBinBase IDs (). To find the VOCs that contributed to differences between the VOC profiles of samples harvested from MS and those from water, bidirectional orthogonal projection onto latent structur […]
Recent Progress in the Development of Metabolome Databases for Plant Systems Biology
[…] BinBase are a Laboratory Information Management System (LIMS)/database system for automated metabolite annotation and mass spectra, respectively. The Adams library (Adams, ), Terpenoids Library, and VocBinBase (Skogerson et al., ) are GC-specific MSRI libraries for volatile compounds. The former two are commercially available, while the VocBinBase database is freely available for their provisiona […]
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