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Voronota specifications


Unique identifier OMICS_16800
Name Voronota
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data A 3D structure.
Input format .PDB
Output data The balls corresponding to the atoms, the vertices of the Voronoi diagram.
Output format .TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License MIT License
Computer skills Advanced
Version 1.15
Stability Stable
Maintained No




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Publication for Voronota

Voronota citation


Crystal structure correlations with the intrinsic thermodynamics of human carbonic anhydrase inhibitor binding

PMCID: 5831161
PMID: 29503769
DOI: 10.7717/peerj.4412

[…] range 0.17–0.51 å and we conclude that no significant conformational changes occur upon ligand binding., the buried surface area (bsa) and accessible surface area (asa) values were calculated using voronota (v. 1.10.1544, ) program. hydrogen atoms were added to models by perl script. the initial parameters for contacts calculation were set as follows: (1) rolling probe radius was default (1.4 […]

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Voronota institution(s)
Institute of Biotechnology, Vilnius University, Vilnius, Lithuania; Faculty of Mathematics and Informatics, Vilnius University, Vilnius, Lithuania
Voronota funding source(s)
This work was supported by European Social Fund under the Global Grant measure.

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