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voxbo specifications

Information


Unique identifier OMICS_21600
Name voxbo
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.8.5
Stability Stable
Requirements
gsl, zlib, libpng, readline, boost, QT4, octave, libgpg-error, libgcrypt, gnutls, BerkeleyDB
Maintained No

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Versioning


No version available

Maintainer


This tool is not maintained anymore.

Additional information


https://github.com/kimberg/voxbo

voxbo citations

 (5)
library_books

The Cognitive Neuroplasticity of Reading Recovery following Chronic Stroke: A Representational Similarity Analysis Approach

2017
PMCID: 5320323
PMID: 28270937
DOI: 10.1155/2017/2761913

[…] n” normalized template in MNI space [] and then resampled to 1 mm axial resolution using AFNI's 3dresample. Lastly, percent damage was calculated in Automated Anatomical Labeling (AAL) space [] using VoxBo (http://www.voxbo.org).CH's lesion included a large portion of the left hemisphere (38% of all left hemisphere voxels). Damage was most extensive in the parietal lobe, including nearly all of th […]

library_books

Cognitive Control of Episodic Memory in Schizophrenia: Differential Role of Dorsolateral and Ventrolateral Prefrontal Cortex

2015
Front Hum Neurosci
PMCID: 4639631
PMID: 26617507
DOI: 10.3389/fnhum.2015.00604

[…] time correction, realignment to the median image, normalization to template space, and spatial smoothing (8 mm FWHM). Subject-level fMRI analysis was performed using the general linear model (GLM) in VoxBo 1.8. BOLD responses during fixed and variable rule encoding conditions were modeled by convolving vectors of predicted neural activity corresponding to each trial type with a canonical hemodynam […]

call_split

Size Isn't All that Matters: Noticing Differences in Size and Temporal Order

2010
Front Hum Neurosci
PMCID: 2944649
PMID: 20877428
DOI: 10.3389/fnhum.2010.00171
call_split See protocol

[…] al angle. We engaged VLSM, a form of statistical parametric mapping, to map behavioral performance to brain damage on a voxel-by-voxel basis (Kimberg et al., ).Statistical analysis was conducted with Voxbo image-analysis software (www.voxbo.org). In contrast with BOLD analysis, where the dependent value is the signal value in a given voxel and behavior the independent value, in VLSM the presence o […]

call_split

Task Dependent Individual Differences in Prefrontal Connectivity

2010
PMCID: 2923215
PMID: 20064942
DOI: 10.1093/cercor/bhp284
call_split See protocol

[…] jects’ anatomical images to include Brodmann's areas (BAs) where DSST activation was observed. ROIs were drawn on each subject's T1 axial slices by one of the authors (D.A.E.) using software from the VoxBo statistical package. These regions included middle and superior frontal gyri, corresponding to BAs 9 and 46, ventral PFC ROIs including inferior frontal gyri corresponding to BAs 44, 45, and 47, […]

library_books

Persistent neural activity in the human frontal cortex when maintaining space that is “off the map”

2009
Nat Neurosci
PMCID: 3171293
PMID: 19801987
DOI: 10.1038/nn.2406

[…] r ramp) time-shifted by 4,000 ms to account for the hemodynamic lag. Each of the independent variable regressors were entered into a modified general linear model (GLM) for statistical analysis using VoxBo (http://www.voxbo.org). We used the first-order polynomial to estimate delay period activity at the group level because at the individual subject level it predicted significant delay period acti […]

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voxbo funding source(s)
Supported by NIH R01DA014418 and NIH R01MH073529.

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