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Waggawagga specifications

Information


Unique identifier OMICS_07844
Name Waggawagga
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Protein sequences
Programming languages Ruby
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Martin Kollmar

Publication for Waggawagga

Waggawagga citations

 (4)
library_books

Waggawagga CLI: A command line tool for predicting stable single α helices (SAH domains), and the SAH domain distribution across eukaryotes

2018
PLoS One
PMCID: 5812594
PMID: 29444145
DOI: 10.1371/journal.pone.0191924

[…] The focus of Waggawagga-CLI is explicitly on the SAH-domain prediction in large protein sequence datasets (instead of just one at a time). The CLI-version analysis workflow separates prediction and analysis. Seque […]

library_books

Myosin repertoire expansion coincides with eukaryotic diversification in the Mesoproterozoic era

2017
BMC Evol Biol
PMCID: 5583752
PMID: 28870165
DOI: 10.1186/s12862-017-1056-2

[…] in domains were predicted using HMMER3 [] against the Pfam v.28.0 database [] accepting all domains with E > 0.001. Transmembrane helices were predicted with TMHMM v.2 [], single α-helices (SAH) with Waggawagga [], coiled-coil regions with coils [], and sequence motifs with PROSITE []. Domain ranges were corrected and domains manually added to the myosin schemes shown in Fig. , if additional domai […]

library_books

Distribution and evolution of stable single α helices (SAH domains) in myosin motor proteins

2017
PLoS One
PMCID: 5378345
PMID: 28369123
DOI: 10.1371/journal.pone.0174639

[…] 7919 Myosin sequences were obtained from CyMoBase (www.cymobase.org, []), release 19th December 2016, and sorted by class and taxonomy. SAH-domain prediction was performed by querying the Waggawagga API []. The prediction provides an SAH-score for each amino acid within a certain window. Here, we used windows with lengths of 14, 21, 28, and 49 amino acids, and computed SAH-scores for e […]

library_books

Climate change, air pollution and extreme events leading to increasing prevalence of allergic respiratory diseases

2013
PMCID: 3598823
PMID: 23398734
DOI: 10.1186/2049-6958-8-12

[…] ing thunderstorms have been described in Australia. In Melbourne, two large asthma outbreaks (rapid increase in hospital or general practitioner visits for asthma) coincided with thunderstorms []. In WaggaWagga, 215 asthmatic subjects attended the local emergency department, 41 of whom required admission to hospital [].In south eastern Australia, Marks et al. [] observed that the incidence of exce […]

Citations

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Waggawagga institution(s)
Department of NMR-based Structural Biology, Max-Planck-Institute for Biophysical Chemistry, Göttingen, Germany

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