Waggawagga specifications

Information


Unique identifier OMICS_07844
Name Waggawagga
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Protein sequences
Programming languages Ruby
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Martin Kollmar <>

Publication for Waggawagga

Waggawagga in publications

 (3)
PMCID: 5583752
PMID: 28870165
DOI: 10.1186/s12862-017-1056-2

[…] were predicted using hmmer3 [] against the pfam v.28.0 database [] accepting all domains with e > 0.001. transmembrane helices were predicted with tmhmm v.2 [], single α-helices (sah) with waggawagga [], coiled-coil regions with coils [], and sequence motifs with prosite []. domain ranges were corrected and domains manually added to the myosin schemes shown in fig. , if additional […]

PMCID: 5378345
PMID: 28369123
DOI: 10.1371/journal.pone.0174639

[…] the largest available myosin sequence dataset consisting of 7919 manually annotated myosin sequences from 938 species representing all major eukaryotic branches using the sah-prediction algorithm of waggawagga, a recently developed tool for the identification of sah-domains. with this approach we identified sah-domains in more than one third of the supposed 79 myosin subfamilies. depending […]

PMCID: 3598823
PMID: 23398734
DOI: 10.1186/2049-6958-8-12

[…] thunderstorms have been described in australia. in melbourne, two large asthma outbreaks (rapid increase in hospital or general practitioner visits for asthma) coincided with thunderstorms []. in waggawagga, 215 asthmatic subjects attended the local emergency department, 41 of whom required admission to hospital []., in south eastern australia, marks et al. [] observed that the incidence […]


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Waggawagga institution(s)
Department of NMR-based Structural Biology, Max-Planck-Institute for Biophysical Chemistry, Göttingen, Germany

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