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WallProtDB specifications


Unique identifier OMICS_09683
Name WallProtDB
Restrictions to use None
Maintained Yes


  • person_outline Elisabeth Jamet

Publication for WallProtDB

WallProtDB citations


Better Than Nothing? Limitations of the Prediction Tool SecretomeP in the Search for Leaderless Secretory Proteins (LSPs) in Plants

Front Plant Sci
PMCID: 5037178
PMID: 27729919
DOI: 10.3389/fpls.2016.01451

[…] Our conclusions are drawn directly from the available data in WallProtDB and ASURE, and the selection of which sub-sets of both datasets to use for ROC analysis. As such the choice of data determines the precise TPR, FPR and threshold results. Modifications were […]


Understanding the Remodelling of Cell Walls during Brachypodium distachyon Grain Development through a Sub Cellular Quantitative Proteomic Approach

PMCID: 5217356
PMID: 28248231
DOI: 10.3390/proteomes4030021

[…] te.expasy.org/), Pfam (http://pfam.xfam.org/), and InterProScan (http://www.ebi.ac.uk/Tools/pfa/iprscan5/) bioinformatics programs []. The proteomic data of the present work have been included in the WallProtDB database (www.polebio.lrsv.ups-tlse.fr/WallProtDB/) []. The WallProtDB tools were used for cell wall proteome comparisons given in the discussion section. […]


Cell wall proteome of sugarcane stems: comparison of a destructive and a non destructive extraction method showed differences in glycoside hydrolases and peroxidases

BMC Plant Biol
PMCID: 4709929
PMID: 26754199
DOI: 10.1186/s12870-015-0677-0

[…] g at least one specific peptide were considered.CWPs were distributed into eight functional classes according to their annotation using InterPro [] and PFAM []. All the data have been included in the WallProtDB database [].The median of the quantified proteins identified was calculated, being considered as T1R3 and T2R3, for the DT and ND Methods, respectively. Statistical processing was performed […]

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WallProtDB institution(s)
Université de Toulouse, UPS, UMR 5546, Laboratoire de Recherche en Sciences Végétales, Castanet-Tolosan, France; CNRS, UMR 5546, Castanet-Tolosan, France

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