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WallProtDB specifications

Information


Unique identifier OMICS_09683
Name WallProtDB
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Elisabeth Jamet

Publication for WallProtDB

WallProtDB citations

 (3)
library_books

Better Than Nothing? Limitations of the Prediction Tool SecretomeP in the Search for Leaderless Secretory Proteins (LSPs) in Plants

2016
Front Plant Sci
PMCID: 5037178
PMID: 27729919
DOI: 10.3389/fpls.2016.01451

[…] Our conclusions are drawn directly from the available data in WallProtDB and ASURE, and the selection of which sub-sets of both datasets to use for ROC analysis. As such the choice of data determines the precise TPR, FPR and threshold results. Modifications were […]

library_books

Understanding the Remodelling of Cell Walls during Brachypodium distachyon Grain Development through a Sub Cellular Quantitative Proteomic Approach

2016
Proteomes
PMCID: 5217356
PMID: 28248231
DOI: 10.3390/proteomes4030021

[…] te.expasy.org/), Pfam (http://pfam.xfam.org/), and InterProScan (http://www.ebi.ac.uk/Tools/pfa/iprscan5/) bioinformatics programs []. The proteomic data of the present work have been included in the WallProtDB database (www.polebio.lrsv.ups-tlse.fr/WallProtDB/) []. The WallProtDB tools were used for cell wall proteome comparisons given in the discussion section. […]

library_books

Cell wall proteome of sugarcane stems: comparison of a destructive and a non destructive extraction method showed differences in glycoside hydrolases and peroxidases

2016
BMC Plant Biol
PMCID: 4709929
PMID: 26754199
DOI: 10.1186/s12870-015-0677-0

[…] g at least one specific peptide were considered.CWPs were distributed into eight functional classes according to their annotation using InterPro [] and PFAM []. All the data have been included in the WallProtDB database [].The median of the quantified proteins identified was calculated, being considered as T1R3 and T2R3, for the DT and ND Methods, respectively. Statistical processing was performed […]


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WallProtDB institution(s)
Université de Toulouse, UPS, UMR 5546, Laboratoire de Recherche en Sciences Végétales, Castanet-Tolosan, France; CNRS, UMR 5546, Castanet-Tolosan, France

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