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Wasabi | An Integrated Platform for Evolutionary Sequence Analysis and Data Visualization

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An open source, web-based environment for evolutionary sequence analysis. Wasabi visualizes sequence data together with a phylogenetic tree within a modern, user-friendly interface: The interface hides extraneous options, supports context sensitive menus, drag-and-drop editing, and displays additional information, such as ancestral sequences, associated with specific tree nodes. The Wasabi environment supports reproducibility by automatically storing intermediate analysis steps and includes built-in functions to share data between users and publish analysis results. For computational analysis, Wasabi supports PRANK and PAGAN for phylogeny-aware alignment and alignment extension, and it can be easily extended with other tools. Along with drag-and-drop import of local files, Wasabi can access remote data through URL and import sequence data, GeneTrees and EPO alignments directly from Ensembl.

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Wasabi classification

Wasabi specifications

Unique identifier:
OMICS_11522
Restrictions to use:
None
License:
GNU Affero General Public License version 3
Stability:
Stable
Interface:
Web user interface
Input data:
Wasabi supports a large number of input file formats for importing sequence and phylogenetic tree data, including: FASTA, ClustalW, Phylip, Newick, Extended Newick, NEXUS, HSAML and PhyloXML.
Computer skills:
Basic
Maintained:
Yes

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Wasabi classification

Wasabi specifications

Unique identifier:
OMICS_11522
Interface:
Graphical user interface
Input data:
Wasabi supports a large number of input file formats for importing sequence and phylogenetic tree data, including: FASTA, ClustalW, Phylip, Newick, Extended Newick, NEXUS, HSAML and PhyloXML.
License:
GNU Affero General Public License version 3
Stability:
Stable
Software type:
Application/Script
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS
Computer skills:
Medium
Maintained:
Yes

Wasabi distribution

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Wasabi support

Maintainer

  • Ari Löytynoja <>
  • Ari Löytynoja <>

Credits

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Publications

Institution(s)

Institute of Biotechnology, University of Helsinki, Helsinki, Finland

Funding source(s)

This work was supported by the Biocenter Finland, Biocentrum Helsinki and Marie Curie Career Integration Grants.

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