WaspAtlas specifications

Information


Unique identifier OMICS_10206
Name WaspAtlas
Restrictions to use None
Database management system MySQL
Maintained No

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Publication for WaspAtlas

WaspAtlas citations

 (2)
library_books

Decay of Sexual Trait Genes in an Asexual Parasitoid Wasp

2016
Genome Biol Evol
PMCID: 5381511
PMID: 28172869
DOI: 10.1093/gbe/evw273

[…] ologs was enriched in one of the tissues related to sexual functions. This expression enrichment was determined by identifying the top blastp hit among N. vitripennis and D. melanogaster genes in the Waspatlas () and Flyatlas () databases, respectively. Expression data was available for testes in N. vitripennis and testes, accessory glands and spermathecae in D. melanogaster. We attempted to predi […]

library_books

Analysis of 5’ gene regions reveals extraordinary conservation of novel non coding sequences in a wide range of animals

2015
BMC Evol Biol
PMCID: 4613772
PMID: 26482678
DOI: 10.1186/s12862-015-0499-6

[…] into all possible 20-mers and used bowtie2 v2.0.5 [] to map each sequence to the N. vitripennis evidential gene transcriptome dataset [, ] supplemented with RNA-seq data (data available on http://www.waspatlas.com), as well as the Ensembl version of the official gene set OGS v1.2 augmented with the same data. A 20-mer was counted as transcribed if it mapped to either transcriptome, and the percent […]

WaspAtlas institution(s)
Department of Genetics, University of Leicester, University Road, Leicester, UK
WaspAtlas funding source(s)
This work was funded by the Biotechnology & Biological Sciences Research Council (BBSRC), Grant BB/M01116X/1 for the Midlands Integrative Biosciences Training Partnership (MIBTP) and grant BB/K001922/1.

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