WaveCrest specifications

Information


Unique identifier OMICS_18542
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Some expression matrix, with genes in rows and cells as columns.
Input format CSV
Output data Some normalized expression matrix with genes in row and cells in column following original cell order, cells following recovered order and y-axis shows normalized expression, genes (non-marker) are listed with their corresponding mean squared errors (MSEs).
Output format CSV, PDF, TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Apache License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Li-Fang Chu <>
  • person_outline James Thomson <>

WaveCrest article

WaveCrest institution(s)
Morgridge Institute for Research, Madison, WI, USA; Department of Cell & Regenerative Biology, University of Wisconsin-Madison, Madison, WI, USA; Department of Molecular, Cellular, & Developmental Biology, University of California, Santa Barbara, CA, USA; Department of Statistics, University of Wisconsin, Madison, WI, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI, USA; Present address: Genentech, Inc., South San Francisco, CA, USA; Department of Cell Biology, Harvard Medical School, Boston, MA, USA
WaveCrest funding source(s)
Supported by the National Institutes of Health 4UH3TR000506-03, 5U01HL099773-06, GM102756, U54 AI117924 and the Charlotte Geyer Foundation, and the Morgridge Institute for Research.

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