Weaver specifications


Unique identifier OMICS_28830
Name Weaver
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A whole genome sequencing sample from a tumor sequence and reference file.
Input format BAM,FASTA
Output data An allele-specific cancer genome graph.
Operating system Unix/Linux
Programming languages C++, Perl
License MIT License
Computer skills Advanced
Stability Stable
Requirements CMake, Bamtools, Parallel::ForkManager, Bedtools, Samtools, BOOST C++ liabrary, BWA, Bowtie, libz
Maintained Yes



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  • person_outline Jian Ma <>
  • person_outline Yang Li <>

Weaver articles

Weaver institution(s)
Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
Weaver funding source(s)
Supported, in part, by the National Institutes of Health Grants CA182360 and HG007352, and the National Science Foundation Grants 1054309 and 1262575.

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