WebArrayDB statistics

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Associated diseases

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WebArrayDB specifications

Information


Unique identifier OMICS_00782
Name WebArrayDB
Interface Web user interface
Restrictions to use None
Input data A microarray intensity files, gene list file and others.
Output data The output files include tab-delimited text files and graphic plots that can be downloaded separately or viewed online.
Computer skills Basic
Stability Stable
Maintained Yes

Publication for WebArrayDB

WebArrayDB in publications

 (18)
PMCID: 5248947
PMID: 28144153
DOI: 10.2147/OTT.S117165

[…] tailored to treat individual patients., we compared microarray data sets from long-term survivors (ltss) and short-term survivors (stss) to screen for prognostic biomarkers in gbm patients using the webarraydb platform. we focused on fbln4, igfbp-2, and chi3l1, all members of a group of 10 of the most promising, differentially regulated gene candidates. using formalin-fixed paraffin-embedded gbm […]

PMCID: 5039730
PMID: 27677332
DOI: 10.1038/srep34154

[…] analyzed using the beadstudio for transcriptomic (illumina) software packages. expression was normalized using background subtraction and cubic spline (beadstudio) or composite loess normalization (webarraydb)., rna of hesc-vcms was extracted by rneasyplus mini kit and cdna was synthesized by quantitect reverse transcription kit according to product protocol. accuprimetmpfxsupermix (invitrogen) […]

PMCID: 4815678
PMID: 27065993
DOI: 10.3389/fmicb.2016.00444

[…] scanned using the genepix4000b scanner (molecular devices. sunnyvale, california) with acuity 4.0 software. fluorescence was quantified using nimblescan 2.4 software (roche). data were analyzed with webarraydb using median within-array and quantile between-array normalizations. custom algorithms were used to condense data for presentation at open reading frame resolution. all array data […]

PMCID: 4632510
PMID: 26468132
DOI: 10.1098/rsob.150070

[…] [,]. hybridized chips were scanned using a scanarray gx (perkin elmer) scanner and images were analysed using genepix pro v. 6.0 software. data were normalized and analysed using webarray (www.webarraydb.org) [], with quantile normalization. mutants exhibiting a log2-fold change ratio (m) value of less than or equal to −0.75, a signal intensity (a) value of greater than or equal to 8 […]

PMCID: 4089911
PMID: 25007190
DOI: 10.1371/journal.pone.0099820

[…] (molecular devices, sunnyvale, california) at 5 µm resolution. each replicate gdna for each pool was hybridized at least once. array signals were quantified and analyzed using nimblescan v2.4, webarraydb and custom perl scripts. for the sgd pools, a mutant was deemed to be present with an intact t7 promoter if the median signal intensity of the five closest strand-specific probes […]


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WebArrayDB institution(s)
Genomic Core Facility, Sidney Kimmel Cancer Center, San Diego, CA, USA; Department of Cancer Genetics, Sidney Kimmel Cancer Center, San Diego, CA, USA

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