WebFR3D statistics

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Tool usage distribution map

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Associated diseases

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WebFR3D specifications

Information


Unique identifier OMICS_04471
Name WebFR3D
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Craig L. Zirbel <>

Information


Unique identifier OMICS_04471
Name WebFR3D
Interface Web user interface
Restrictions to use None
Programming languages MATLAB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Craig L. Zirbel <>

Publications for WebFR3D

WebFR3D in publications

 (2)
PMCID: 5001590
PMID: 27166370
DOI: 10.1093/nar/gkw401

[…] substantial catalytic activity, further illustrating the adaptability of the vs ribozyme architecture for cleavage of alternate stem-loop substrates., a bioinformatic search was performed with webfr3d () to find klis in the pdb. the search query was defined as an interaction matrix between a set of 6 nt with no specific nucleotide identity (nt1 to nt6; supplementary figure s1b). […]

PMCID: 3906864
PMID: 24364590
DOI: 10.1021/bi401484a

[…] pymol molecular graphics system, version 1.3 schrödinger, llc., metal-binding motifs similar to those found in slvi were searched in all available x-ray, cryo-em, and nmr structures of the pdb using webfr3d. the search patterns were defined according to their sequential and structural context in slvi using the fr3d symbolic search algorithm. for each search, the results were extracted […]


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WebFR3D institution(s)
Department of Biological Sciences, Department of Mathematics and Statistics and Department of Chemistry, Bowling Green State University, Bowling Green, OH, USA

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