WebGestalt pipeline

WebGestalt specifications

Information


Unique identifier OMICS_02222
Name WebGestalt
Alternative name WEB-based GEne SeT AnaLysis Toolkit
Interface Web user interface
Restrictions to use None
Input data Some values for individual genes.
Output data The analysis summary, gene identifier (ID) mapping information, GO Slim summary and enrichment results.
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Publications for WEB-based GEne SeT AnaLysis Toolkit

WebGestalt IN pipelines

 (35)
2018
PMCID: 5757493
PMID: 29379303
DOI: 10.2147/OTT.S154378

[…] an in silico prediction of which tfs could be regulating multiple genes involved in the maintenance of the mdr phenotype in nci/adr-res was made using the tft-analysis tool implemented in webgestalt (http://www.webgestalt.org).21 we analyzed whether the set of genes whose expression change in nci/adr-res compared to ovcar-8 was significantly enriched with tfts. tfts are specific sets […]

2018
PMCID: 5757493
PMID: 29379303
DOI: 10.2147/OTT.S154378

[…] prediction of which tfs could be regulating multiple genes involved in the maintenance of the mdr phenotype in nci/adr-res was made using the tft-analysis tool implemented in webgestalt (http://www.webgestalt.org).21 we analyzed whether the set of genes whose expression change in nci/adr-res compared to ovcar-8 was significantly enriched with tfts. tfts are specific sets of genes that share […]

2017
PMCID: 5308826
PMID: 28152074
DOI: 10.1371/journal.ppat.1006187

[…] to identify differentially expressed genes [65]., list of genes that were determined to be significantly differentially expressed by rna seq analysis between total rna samples was uploaded to the webgestalt web server {http://www.webgestalt.org} and analyzed for enriched kegg pathways. statistical significance was calculated by webgestalt. pathway graphics were generated using the kegg […]

2017
PMCID: 5308826
PMID: 28152074
DOI: 10.1371/journal.ppat.1006187

[…] genes [65]., list of genes that were determined to be significantly differentially expressed by rna seq analysis between total rna samples was uploaded to the webgestalt web server {http://www.webgestalt.org} and analyzed for enriched kegg pathways. statistical significance was calculated by webgestalt. pathway graphics were generated using the kegg website and performing pathway […]

2017
PMCID: 5308826
PMID: 28152074
DOI: 10.1371/journal.ppat.1006187

[…] rna seq analysis between total rna samples was uploaded to the webgestalt web server {http://www.webgestalt.org} and analyzed for enriched kegg pathways. statistical significance was calculated by webgestalt. pathway graphics were generated using the kegg website and performing pathway enrichment analysis., we thank sarah sutton for technical assistance. we also thank drs. pradeep uchil, […]

WebGestalt institution(s)
Lester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX, USA; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA; Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, USA
WebGestalt funding source(s)
Supported by National Cancer Institute (NCI) [U24 CA210954]; Leidos Biomedical Research, Inc. [15X038]; Cancer Prevention & Research Institutes of Texas Scholarship (CPRIT) [RR160027] and McNair Medical Institute Scholarship.

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