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Citations per year

Number of citations per year for the bioinformatics software tool WebGraph

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This map represents all the scientific publications referring to WebGraph per scientific context
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WebGraph specifications


Unique identifier OMICS_16867
Name WebGraph
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 3.5.2
Stability Stable
Maintained Yes




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  • person_outline Sebastiano Vigna

WebGraph citations


The Robustness and the Doubly Preferential Attachment Simulation of the Consensus Connectome Dynamics of the Human Brain

Sci Rep
PMCID: 5700977
PMID: 29170405
DOI: 10.1038/s41598-017-16326-0

[…] uncovering the possible mechanism involved in the development (or evolution) of the graph. As the most famous example, the Barabási-Albert model for the description of the degree distribution of the webgraph, uses the “preferential attachment” principle in the description of the development of the webgraph. In the Barabási-Albert model, roughly, in every step one new vertex appears, and it connec […]


Protein interaction networks as metric spaces: a novel perspective on distribution of hubs

BMC Syst Biol
PMCID: 3902029
PMID: 24438364
DOI: 10.1186/1752-0509-8-6

[…] interactions. In order to compare the biological graphs with random graphs, we generated uniform random power-law graphs that are similar in terms of number of nodes and interactions using the Python Webgraph Generator ( http://pywebgraph.sourceforge.net/), which implements the RMAT algorithm []. […]


High Resolution Mapping of H1 Linker Histone Variants in Embryonic Stem Cells

PLoS Genet
PMCID: 3636266
PMID: 23633960
DOI: 10.1371/journal.pgen.1003417

[…] tive to gene regions was analyzed by CEAS . Top 10% of enriched regions for each ChIP-seq library were selected to identify the overrepresented features using EpiGRAPH (http://epigraph.mpi-inf.mpg.de/WebGRAPH/) . 2214 H1d/H1c common peaks, 1939 H1d unique peaks, 433 H1c unique peaks, 1891 H3K9me3 peaks, 4778 H3K27me3 peaks, and 3446 H3K4me3 peaks were analyzed by EpiGRAPH. […]


Genome wide DNA methylation analysis in cohesin mutant human cell lines

Nucleic Acids Res
PMCID: 2943628
PMID: 20448023
DOI: 10.1093/nar/gkq346

[…] EpiGRAPH (http://epigraph.mpi-inf.mpg.de/WebGRAPH/) is an online software to analyze genomic and epigenomic features that are enriched in given DNA fragments (). As described above, we have identified 924 CpG sites correlated to 902 genes th […]


Inter individual variation of DNA methylation and its implications for large scale epigenome mapping

Nucleic Acids Res
PMCID: 2425484
PMID: 18413340
DOI: 10.1093/nar/gkn122

[…] DNA methylation patterns while amplicons with low values do not (but may still exhibit similar average methylation levels across individuals).The EpiGRAPH web service (http://epigraph.mpi-inf.mpg.de/WebGRAPH/) was used to test a large number of genomic attributes for their ability to distinguish between amplicons with high versus low high-resolution improvement. To that end, two lists of amplicon […]

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