WebGraph

[…] uncovering the possible mechanism involved in the development (or evolution) of the graph. as the most famous example, the barabási-albert model for the description of the degree distribution of the webgraph, uses the “preferential attachment” principle in the description of the development of the webgraph. in the barabási-albert model, roughly, in every step one new vertex appears, […]

[…] nrcistrome http://www.cistrome.org/cistrome/cistrome_project.html., gwava http://www.sanger.ac.uk/sanger/statgen_gwava., methdb http://www.methdb.de., epigraph http://epigraph.mpi-inf.mpg.de/webgraph/., braincloudmethyl http://braincloud.jhmi.edu/methylation64/braincloudmethyl64bit.htm., fetal brain meqtls http://epigenetics.essex.ac.uk/mqtl/., psychencode http://psychencode.org/., […]

[…] to gene regions was analyzed by ceas . top 10% of enriched regions for each chip-seq library were selected to identify the overrepresented features using epigraph (http://epigraph.mpi-inf.mpg.de/webgraph/) . 2214 h1d/h1c common peaks, 1939 h1d unique peaks, 433 h1c unique peaks, 1891 h3k9me3 peaks, 4778 h3k27me3 peaks, and 3446 h3k4me3 peaks were analyzed by epigraph., esc nuclei […]

[…] browser (http://genome.ucsc.edu/). c→t changes at cpg sites were documented., all procedures were performed as describe in our previous publication ()., epigraph (http://epigraph.mpi-inf.mpg.de/webgraph/) is an online software to analyze genomic and epigenomic features enriched in a group of given dna fragments (). epigraph was used to analyze dna sequences harboring the differentially […]

[…] methylation patterns while amplicons with low values do not (but may still exhibit similar average methylation levels across individuals)., the epigraph web service (http://epigraph.mpi-inf.mpg.de/webgraph/) was used to test a large number of genomic attributes for their ability to distinguish between amplicons with high versus low high-resolution improvement. to that end, two lists […]