WebLogo specifications

Information


Unique identifier OMICS_05886
Name WebLogo
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline WebLogo Team <>

Information


Unique identifier OMICS_05886
Name WebLogo
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline WebLogo Team <>

WebLogo article

WebLogo citations

 (38)
2017
PMCID: 5748583

[…] modules were identified using cd-search [31]. multiple sequence alignments of cohesins and dockerins were generated using clustalo [32]. weblogos of dockerin sequences were constructed using weblogo 2.8.2 [33]. the accession numbers or orfs of the identified dockerin-containing proteins are listed in supplementary table s1, and identification of their signal peptide was done using […]

2017
PMCID: 5531549

[…] sequence alignments were performed using clustal-omega (http://www.ebi.ac.uk/tools/msa/clustalo/). to visualize the conserved motifs, the sequences were analyzed with weblogo programs (http://weblogo.berkeley.edu). a phylogenetic tree was constructed using mega 7.0 (http://www.megasoftware.net) using the neighbor-joining method with the following parameters: pairwise deletion option, 1000 […]

2017
PMCID: 5435695

[…] supplementary table┬ás3. the conservation analysis was performed only on lentiviruses with more than 5 sequences available in databases. logo representation of base conservation was obtained by the weblogo software70., the prediction of sp1 binding sites in putative g4 forming sequences were performed by the web-based tool physbinder using the model hsa0000031.1 [sp1] with the max. f-measure […]

2017
PMCID: 5417524

[…] of the initiation site and termination site of the corresponding ma., motifs of sequences adjacent to origins and terminals of mas in ervs were generated based on weblogo version 2.8.2 (http://weblogo.berkeley.edu/logo.cgi) and shown in fig 2. from the figure, we can defer that sequences on both ends of mas in ervs are fairly conservative. this explains why satisfying results could […]

2017
PMCID: 5358852

[…] software (http://www.ncbi.nih.gov/structure) and high resolution structures of the ankyrin repeats of human notch1 (pdb id: 2f8y, mmdb: 38239) [26]. the motif logo of fig 3b was constructed using weblogo (http://weblogo.berkeley.edu/logo.cgi). the source sequences for dipteran notch proteins are from the following accessions and additional analyses: aac36153.1, aac36151.1 (lucilia cuprina), […]

WebLogo institution(s)
Department of Plant and Microbial Biology, University of California, Berkeley, California, USA

WebLogo reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review WebLogo