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WebLogo specifications

Information


Unique identifier OMICS_05886
Name WebLogo
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline WebLogo Team

Information


Unique identifier OMICS_05886
Name WebLogo
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline WebLogo Team

Publication for WebLogo

WebLogo citations

 (1774)
library_books

Regulatory protein SrpA controls phage infection and core cellular processes in Pseudomonas aeruginosa

2018
Nat Commun
PMCID: 5945682
PMID: 29748556
DOI: 10.1038/s41467-018-04232-6

[…] otein sequences (nr) database using PSI-BLAST (position-specific iterated BLAST) in NCBI. Conserved amino acid residues were predicted from the top 1000 SrpA homologous sequences using an online tool WebLogo (http://weblogo.berkeley.edu/). […]

library_books

Delineation of condition specific Cis and Trans acting elements in plant promoters under various Endo and exogenous stimuli

2018
BMC Genomics
PMCID: 5954277
PMID: 29764390
DOI: 10.1186/s12864-018-4469-4

[…] nment of the overlapping motifs was performed to check conserved bases by using the ClustalW program (version 2.1) []. The sequence logos for consensus DNA-binding sites were then displayed using the WebLogo tool [].Top10 3-mer and 4-mer motifs and sequence logos of each CsTF on all other conditions can be retrieved from our online database (http://wcchang.itps.ncku.edu.tw/CsTFAnalysis/). The moti […]

library_books

Substrate specificity of human MCPIP1 endoribonuclease

2018
Sci Rep
PMCID: 5943514
PMID: 29743536
DOI: 10.1038/s41598-018-25765-2

[…] of MCPIP1-triggered degradation of RNA, we presented the identified sites of cleavage as a consensus logo (Supplementary Fig. ). For logotype preparation, we used the sequence logo generator software WebLogo. We figured out that cleavage sites lacking G nts in the immediate vicinity of the cut site were preferable for MCPIP1-induced cleavage (Supplementary Fig. ).Observed at Fig.  oligonucleotides […]

library_books

Deep Surveying of the Transcriptional and Alternative Splicing Signatures for Decidual CD8+ T Cells at the First Trimester of Human Healthy Pregnancy

2018
Front Immunol
PMCID: 5946033
PMID: 29780389
DOI: 10.3389/fimmu.2018.00937

[…] sidered (), and the proportion of each splice site motifs GT-AG, GC-AG, AT-AC, and others was evaluated by the number of junctional read counts. Sequence logos of splice site motifs were generated by WebLogo. […]

call_split

Genome wide analysis of the SPL/miR156 module and its interaction with the AP2/miR172 unit in barley

2018
Sci Rep
PMCID: 5935748
PMID: 29728569
DOI: 10.1038/s41598-018-25349-0
call_split See protocol

[…] MEME 4.11.0 tool (http://meme-suite.org/tools/meme), using default settings, except that the maximum width was 50, the minimum width was 6, and the maximum number of motifs to find was 10. The online WebLogo3 platform (http://weblogo.threeplusone.com/) was used to create the sequence logo of the barley SBP domain. The genomic and cDNA sequences of HvSPLs were analysed to predict the putative targe […]

library_books

Identification and characterization of ORF19.1725, a novel gene contributing to the white cell pheromone response and virulence associated functions in Candida albicans

2018
PMCID: 5955465
PMID: 29726301
DOI: 10.1080/21505594.2018.1456228

[…] on is less likely to be accurate due to a very low specificity (32.5%) ( and ) []. Interestingly, four tandem repeats were found ( and ): TR1 (26 aa), TR2 (17 aa), TR3 (40 aa) and TR4 (55 aa) (http://weblogo.threeplusone.com/create.cgi) []. These data reveal that Orf19.1725 might be an adhesin and is involved in cell adhesion. However, the protein sequence of Orf19.1725 does not share any sequence […]

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WebLogo institution(s)
Department of Plant and Microbial Biology, University of California, Berkeley, California, USA

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