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WebMGA | A customizable web server for metagenomic sequence analysis

A customizable web server for fast metagenomic analysis. WebMGA includes over 20 commonly used tools such as ORF calling, sequence clustering, quality control of raw reads, removal of sequencing artifacts and contaminations, taxonomic analysis, functional annotation etc. WebMGA provides users with rapid metagenomic data analysis using fast and effective tools, which have been implemented to run in parallel on our local computer cluster. Users can access WebMGA through web browsers or programming scripts to perform individual analysis or to configure and run customized pipelines. WebMGA offers to researchers many fast and unique tools and great flexibility for complex metagenomic data analysis.

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WebMGA classification

WebMGA specifications

Unique identifier:
OMICS_01524
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes
Software type:
Toolkit/Suite
Restrictions to use:
None
Programming languages:
Perl
Stability:
Stable

WebMGA distribution

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WebMGA forum

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WebMGA classification

WebMGA specifications

Unique identifier:
OMICS_01524
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Programming languages:
Perl
Stability:
Stable

WebMGA support

Maintainer

  • Weizhong Li <>
  • Weizhong Li <>

Credits

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Publications

Institution(s)

Center for Research in Biological Systems, University of California San Diego, La Jolla, CA, USA

Funding source(s)

This study was supported by Award R01HG005978 from the National Human Genome Research Institute (NHGRI) and Award R01RR025030 from National Center for Research Resources (NCRR).

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