WebMicroscope specifications


Unique identifier OMICS_27346
Name WebMicroscope
Interface Web user interface
Restrictions to use License purchase required
Computer skills Basic
Stability Stable
Registration required Yes
Maintained Yes

Additional information


WebMicroscope in publications

PMCID: 5947161
PMID: 29443392
DOI: 10.1002/path.5059

[…] platform, its members for guidance, and john hickman for coordination and endorsement of the slice technology. we thank anton berns for sharing the progenitor cell‐directed adenoviruses, the fimm webmicroscope team for scanning histological slides, and the laboratory animal centre for husbandry support. we acknowledge statistics support from swapnil potdar, and excellent technical support […]

PMCID: 5821847
PMID: 29467373
DOI: 10.1038/s41598-018-21758-3

[…] hungary) with the image resolution of 0.22 μm/pixel. the tma spots were annotated, linked to patient id and extracted from the whole-slide tma images using whole-slide image management software (webmicroscope, fimmic oy, helsinki). the extracted tma spot images were cropped from the center of the image (3500 × 3500 pixels) to remove surrounding white background., follow-up time and outcome […]

PMCID: 5645671
PMID: 28838305
DOI: 10.1080/16549716.2017.1337325

[…] different locations of the samples. acquired images (representing single fields of view) are saved on the local storage of the computer and uploaded to an image processing and management platform (webmicroscope, fimmic oy, helsinki, finland) running on a cloud server (university of helsinki, meilahti campus library terkko, helsinki, finland). the image management server is password protected […]

PMCID: 5027738
PMID: 27688929
DOI: 10.4103/2153-3539.189703

[…] were compressed into a wavelet format (enhanced compressed wavelet, ecw, er mapper, intergraph, atlanta, ga) with a compression ratio of 1:9 and stored on a whole-slide image management server (webmicroscope, fimmic oy, helsinki, finland). the average size of the digital samples was 8.5 × 109 pixels (range: 2.3 × 109–12.4 × 109)., based on the cd45-expression, we annotated a training set […]

PMCID: 4931419
PMID: 27322330
DOI: 10.3390/diagnostics6020024

[…] components—identified as glycoconjugates by lectin affinity [,]—into the surrounding tissue leads to a vigorous host response, seen as a granuloma surrounding the eggs in tissues (http://www.webmicroscope.net/parasitology/). this inflammatory response involving plasminogen activation creates a channel through which the egg is transported through the sub-epithelial and epithelial tissues […]

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