WebMOTIFS statistics

You need an account to access this content

info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Motif discovery chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

WebMOTIFS specifications

Information


Unique identifier OMICS_06275
Name WebMOTIFS
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Stability No
Maintained No

Publication for WebMOTIFS

WebMOTIFS in publications

 (5)
PMCID: 5021170
PMID: 27017927
DOI: 10.1002/glia.22977

[…] regions masked using the built‐in repeat masking algorithm in the ucsc genome browser and tandem repeat finder (benson, ). de novo motif discovery was performed using the command‐line version of webmotifs (romer et al., ). the set of 75 peak sequences was used in three different motif discovery programs: alignace (hughes et al., ), weeder (pavesi et al., ) and mdscan (liu et al., ). […]

PMCID: 3030562
PMID: 21297973
DOI: 10.1371/journal.pone.0016330

[…] expressed genes using two of the most widely used tools for this type of in silico analysis, opossum only identified the binding site for one of the 19 factors shown in (i.e. cebpa) and webmotifs failed to identify any significant motifs at all (see figure s11 in ). by contrast, our direct measurements of differential levels of histone acetylation allowed us to select […]

PMCID: 3091674
PMID: 20716365
DOI: 10.1186/1471-2164-11-478

[…] and is also enriched for the cell division go category (p = 0.0018), a mitotic related category, intimately associated with meiotic divisions as well. second, using de novo motif search algorithms (webmotifs; http://fraenkel.mit.edu/webmotifs/ and []), we found that the promoters of these genes are highly enriched for the presence of the middle sporulation element (mse) (specificity score […]

PMCID: 2858157
PMID: 20422009
DOI: 10.1371/journal.pone.0010268

[…] database (http://www.sabiosciences.com/chipqpcrsearch.php?app=tfbs)., finally, we determined how many genes in the gene clusters have e2f binding sites. we applied the motif discovery tool, webmotifs to find shared motifs in the gene clusters predicted to the e2f targets using binding site enrichment analysis (bsea). the results revealed that a motif called e2f_tdp, gcgssaaa, […]

PMCID: 2386822
PMID: 18426580
DOI: 10.1186/1471-2105-9-203

[…] regulates donor preference during switching. to further investigate the possibilities that the predicted downstream gene clusters are truly regulated by fkh1, we applied the motif discovery tool, webmotifs [] to find shared motifs in these gene clusters. the results revealed that a motif called fork_head, gtaaacaa, is identified as the most significant motif among these gene clusters []. […]

WebMOTIFS institution(s)
Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA

WebMOTIFS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review WebMOTIFS