WebQTL statistics

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Citations per year

Number of citations per year for the bioinformatics software tool WebQTL
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Tool usage distribution map

This map represents all the scientific publications referring to WebQTL per scientific context
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Associated diseases

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Protocols

WebQTL specifications

Information


Unique identifier OMICS_07096
Name WebQTL
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publications for WebQTL

WebQTL citations

 (99)
library_books

Integrating Genetic and Gene Co expression Analysis Identifies Gene Networks Involved in Alcohol and Stress Responses

2018
PMCID: 5895640
PMID: 29674951
DOI: 10.3389/fnmol.2018.00102

[…] of The University of Tennessee Health Science Center and The University of Memphis. More detailed information about BXD strains for each group is available at GeneNetwork: NOS: http://genenetwork.org/webqtl/main.py?FormID=shar inginfo&GN_AccessionId=814RSS: http://genenetwork.org/webqtl/main.py?FormID=shar inginfo&GN_AccessionId=815NOE: http://genenetwork.org/webqtl/main.py?FormID=shar inginfo&GN_ […]

call_split

Genomic Locus Modulating IOP in the BXD RI Mouse Strains

2018
PMCID: 5940149
PMID: 29496776
DOI: 10.1534/g3.118.200190
call_split See protocol

[…] means were used to generate genome-wide interval maps. All of these data are available on GeneNetwork.org. Genotype was regressed against each trait using the Haley-Knott equations implemented in the WebQTL module of GeneNetwork (; ; ). Empirical significance thresholds of linkage are determined by permutations (). We correlated phenotypes with gene expression data for whole eye and retina (; ; ). […]

library_books

Genomic locus modulating corneal thickness in the mouse identifies POU6F2 as a potential risk of developing glaucoma

2018
PLoS Genet
PMCID: 5784889
PMID: 29370175
DOI: 10.1371/journal.pgen.1007145

[…] onal QTL analysis using simple and composite interval mapping and pair-scans for epistatic interactions. Genotypes were regressed against each trait using the Haley-Knott equations implemented in the WebQTL module of GeneNetwork [, ]. Empirical significance thresholds of linkage were determined by permutations []. We correlated phenotypes with expression data for whole eye and retina generated by […]

library_books

Identification of quantitative trait loci associated with the susceptibility of mouse spermatozoa to cryopreservation

2017
PMCID: 5902899
PMID: 29269609
DOI: 10.1262/jrd.2017-148

[…] All QTL mapping for phenotypes was performed using the WebQTL software module of the GeneNetwork (www.genenetwork.org) []. Interval mapping to evaluate potential QTLs was calculated from the likelihood ratio statistics (LRS) as the software’s default meas […]

library_books

Systems genetics identifies a role for Cacna2d1 regulation in elevated intraocular pressure and glaucoma susceptibility

2017
Nat Commun
PMCID: 5701146
PMID: 29176626
DOI: 10.1038/s41467-017-00837-5

[…] -old BXD strains was integrated into the GeneNetwork database. The identification and mapping of phenotypic QTL was performed by linking trait data to genotypes at known genetic marker loci using the WebQTL module on GeneNetwork (http://www.genenetwork.org/), , , . […]

library_books

Gene Expression Networks in the Murine Pulmonary Myocardium Provide Insight into the Pathobiology of Atrial Fibrillation

2017
PMCID: 5592927
PMID: 28720711
DOI: 10.1534/g3.117.044651

[…] The GeneNetwork suite of online programs, incorporating WebQTL (; ), was used to analyze the publicly available BXD lung transcriptome data set (GN160) (www.genenetwork.org/webqtl/main.py) generated by . Genome-wide association analyses were performed usin […]


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WebQTL institution(s)
Department of Anatomy and Neurobiology, Center for Genomics and Bioinformatics, University of Tennessee Health Science Center, Memphis, TN, USA

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