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Webserver fOr Position Related data analysis of gene Expression in Prokaryotes WoPPER

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Integrates transcriptional expression data and genomic annotations to identify groups of physically contiguous genes characterized by regional differential expression in bacterial genomes. WoPPER Is a web app that can analyze any RNA-seq or microarray-based gene expression dataset from any microorganism with a sequenced and annotated genome. This resource provides researchers with novel and informative insights regarding the correlation between gene expression and chromosomal organization in bacterial genomes.

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WoPPER classification

WoPPER specifications

Interface:
Web user interface
Input data:
Requires as input at least one Gene Expression Data file (GED file) containing the genome-wide differential expression levels.
Output data:
Provides three types of output: Tabular Results, Circular Plots and Linear Plots.
Computer skills:
Basic
Stability:
Stable
Restrictions to use:
None
Input format:
GED
Programming languages:
PHP
Version:
1.1
Maintained:
Yes

WoPPER support

Maintainer

Additional information

https://wopper.ba.itb.cnr.it/Tutorials

Credits

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Publications

Institution(s)

Institute of Biomedical Technologies, National Research Council, Segrate, Milan, Italy; Institute of Biomedical Technologies, National Research Council, Bari, Italy; Department of Life Sciences, Center for Genome Research, University of Modena and Reggio Emilia, Modena, Italy; IFOM, the FIRC Institute of Molecular Oncology, Milan, Italy; Institute of Molecular Genetics, National Research Council, Pavia, Italy

Funding source(s)

This work was supported by the Italian Ministry of Education and University, PRIN Project [2010P3S8BR 002]; National Research Council (CNR) Flagship Project InterOmics; AIRC Start-up grant 2015 [N.16841].

Link to literature

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