WEGO protocols

WEGO specifications

Information


Unique identifier OMICS_04145
Name WEGO
Alternative name Web Gene Ontology Annotation Plot
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publications for Web Gene Ontology Annotation Plot

WEGO IN pipelines

 (37)
2018
PMCID: 5784662
PMID: 29368590
DOI: 10.1186/s12870-017-1220-2

[…] a relatively large minimum module size of 30 and a medium sensitivity (deepsplit = 2) to cluster splitting [22]. the resulting genes (threshold weight ≥ 0.1) involved in psarfs was analyzed with bgi wego (http://wego.genomics.org.cn/) to assign gene ontology (go) terms [54]. cytoscape was implemented for visualizing interaction networks [39]., the recent development of the rna-seq method […]

2018
PMCID: 5784662
PMID: 29368590
DOI: 10.1186/s12870-017-1220-2

[…] large minimum module size of 30 and a medium sensitivity (deepsplit = 2) to cluster splitting [22]. the resulting genes (threshold weight ≥ 0.1) involved in psarfs was analyzed with bgi wego (http://wego.genomics.org.cn/) to assign gene ontology (go) terms [54]. cytoscape was implemented for visualizing interaction networks [39]., the recent development of the rna-seq method provides information […]

2018
PMCID: 5827294
PMID: 29520289
DOI: 10.3389/fpls.2018.00217

[…] gene expression profiling, gene ontology (go) enrichment analysis of functional significance was applied using the hypergeometric test to map all differentially expressed genes to terms in the bgi wego (web gene ontology annotation plotting, http://wego.genomics.org.cn/) looking for significantly enriched go terms in the differentially expressed genes, and comparing them to the transcriptome […]

2018
PMCID: 5827294
PMID: 29520289
DOI: 10.3389/fpls.2018.00217

[…] analysis of functional significance was applied using the hypergeometric test to map all differentially expressed genes to terms in the bgi wego (web gene ontology annotation plotting, http://wego.genomics.org.cn/) looking for significantly enriched go terms in the differentially expressed genes, and comparing them to the transcriptome database. to identify degs across the samples, […]

2017
PMCID: 5306291
PMID: 28261226
DOI: 10.3389/fpls.2017.00112

[…] goseq r package (release2.12). go terms with corrected p < 0.05 were considered remarkably enriched by differentially expressed genes. the go annotations were functionally classified using the wego software for gene function distributions. kobas software (v2.0) was used to identify the statistical enrichment of differentially expressed genes in kegg pathways. the pathways with an fdr value […]

WEGO institution(s)
James D Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, China

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