WemIQ protocols

WemIQ specifications

Information


Unique identifier OMICS_06516
Name WemIQ
Alternative name Weighted-log-likelihood expectation maximization method on Isoform Quantification
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Weighted-log-likelihood expectation maximization method on Isoform Quantification

WemIQ IN pipeline

2015
PMCID: 5672851
PMID: 25969149
DOI: 10.1159/000382140

[…] uptake. rnaseq was performed on triplicate cell samples, before and after tnf-α treatment. reads were mapped by tophat 2.0 and isoform quantification was performed by cufflinks 2.2 and wemiq, using the mouse reference genome (mm10 build). transcript isoforms were classified into 12 categories based on the nature of differential expression in response to tnf-α. exon skipping […]

WemIQ institution(s)
Ming Hsieh Department of Electrical Engineering, University of Southern California, Los Angeles, CA, USA; Molecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA

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