WES specifications


Unique identifier OMICS_14831
Name WES
Alternative name Whole Exome Sequencing Analysis Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data The raw read data with well-calibrated base error estimates, the reference genome.
Input format FASTQ
Output data The filtered mapped reads, the recalibrated and realigned BAM files, the paired read information, the predicted SNV calling.
Output format BAM
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements SAMtools, BAMtools, BEDtools, GATK, DBSNP, REFSEQ, PICARD
Maintained Yes



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  • person_outline Peter Zandi <>

Publication for Whole Exome Sequencing Analysis Pipeline

WES institution(s)
Department of Psychiatry and Behavioral Sciences, Johns Hopkins University, Baltimore, MD, USA; Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, Woodbury, NY, USA; Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA, USA; Watson School of Biological Science, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA
WES funding source(s)
This project is supported by the NIH funding from R01MH087979, R01MH087992, and K01MH093809.

WES review

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ehsan razmara

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