Wessim statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

Wessim specifications

Information


Unique identifier OMICS_00259
Name Wessim
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Wessim

Wessim in publications

 (3)
PMCID: 5636151
PMID: 29020110
DOI: 10.1371/journal.pone.0186175

[…] proportions. finally, we simulated ten tumors using a range of 0% to 90% admixture with control sequence. summarizes the variants present in the parental genomes., for each tumor data set, we used wessim [] to generate 100 bp illumina reads with a mean insert size of 300 bp (standard deviation 100) for exome and 200 bp (s.d. 50) for panel data, and median coverage of 70x and 520x for exon […]

PMCID: 5209852
PMID: 28049408
DOI: 10.1186/s12859-016-1417-7

[…] found in the real ccrcc and its matched normal sample were put in the phylogenetic tree., finally, reads are generated from the normal genome and the clones using the software library seqan [] and wessim []. the tumor sample was generated by mixing the reads from the clones and varying proportions of reads from the normal sample. the weighting of the clones was determined by drawing […]

PMCID: 5125660
PMID: 27893777
DOI: 10.1371/journal.pone.0167047

[…] of existing simulators compared against are those most often used, according to number of paper citations: art, curesim, dwgsim [], gemsim (including the the targeted sequencing functionality of wessim []), mason [], pirs, and sinc []. varsim [] is not explicitly listed as it is a wrapper around dwgsim and art., comparison of the main features of several existing read simulator packages., ×: […]


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Wessim institution(s)
Department of Computer Science and Engineering and Department of Electrical and Computer Engineering, University of California at San Diego, La Jolla, CA, USA

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