WGSA specifications

Information


Unique identifier OMICS_11107
Name WGSA
Alternative name WGS annotator
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data To run WGSA, the user only needs to upload a variant list file (or a .vcf file) and a configuration file, containing a list of the resources to be included in the annotation.
Operating system Unix/Linux
Parallelization MapReduce
Computer skills Advanced
Version 0.55
Stability Stable
High performance computing Yes
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


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Maintainer


  • person_outline Xiaoming Liu <>

Publication for WGS annotator

WGSA institution(s)
Human Genetics Center, School of Public Health, University of Texas Health Science Center at Houston, Houston, TX, USA; Department of Epidemiology, Human Genetics and Environmental Sciences, School of Public Health, University of Texas Health Science Center at Houston, Houston, TX, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA; Department of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, Houston, TX, USA; NHLBI Framingham Heart Study, Bethesda, MD, USA; Population Sciences Branch, NHLBI Division of Intramural Research, Bethesda, MD, USA; Cardiovascular Health Research Unit, Department of Medicine, University of Washington, Seattle, WA, USA; DNAnexus, Mountain View, CA, USA; Department of Biostatistics, School of Public Health, University of Texas Health Science Center at Houston, Houston, TX, USA; Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, Icahn Institute for Genomics and Multiscale Biology, NY, New York, USA
WGSA funding source(s)
This study was supported by the US National Institutes of Health (5RC2HL102419 and U54HG003273).

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