Wgsim specifications


Unique identifier OMICS_00260
Name Wgsim
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes



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Wgsim citations

PMCID: 5831535

[…] the implanted cnvs, there were 20 small cnvs (<1kbs), 86 median-size cnvs (between 1k and 3k bps), and 94 large cnvs (>3kbs). next, we used the artificial chromosome as a template and applied wgsim, a sequencing simulator (part of the samtools) [37], to generate 100bps paired-end reads from the template. a total of 50 million paired-end reads were simulated yielding a sequencing coverage […]

PMCID: 5716257

[…] it has chosen to replace, thereby providing a clear audit trail of the actions taken to create any simulated genomes., next, to simulate ngs data, derived from our simulated hybridized genomes, wgsim [27] was applied against the simulated sequence files, generating 50 million paired-end reads that are 75 bp in length, with end-to-end read sizes of 500 bp. the diploid model of read […]

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