Wham specifications


Unique identifier OMICS_14824
Name Wham
Alternative name WHole-genome Alignment Metrics
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The soft clipping information and supplementary alignments provided by mapping software.
Input format BAM
Output data The identified putative SV breakpoints.
Biological technology Illumina
Operating system Unix/Linux
Programming languages C++
License MIT License
Computer skills Advanced
Version 1.7.0
Stability Stable
Requirements CMake, OpenMP
Maintained Yes



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  • person_outline Mark Yandell <>

Publication for WHole-genome Alignment Metrics

Wham institution(s)
Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT, USA; Utah Center for Genetic Discovery, University of Utah, Salt Lake City, UT, USA; Department of Biology, University of Utah, Salt Lake City, UT, USA
Wham funding source(s)
Supported by the NIH (R01GM104390, R01GM114514, R01GM115996, T32AI055434, T32GM07464, 1TL1TR001066, T32HD07491 and F32GM103077), the Burroughs Wellcome Fund (CABS1005281.01) and the NSF (CAREER DEB1149160).

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