Provides the biomedical community with a unified point of access to mutant mice and rich collection of related emerging and existing mouse phenotype data. IMPC mouse clinics worldwide follow rigorous highly structured and standardized protocols for the experimentation, collection and dissemination of data. Dedicated 'data wranglers' work with each phenotyping center to collate data and perform quality control of data. An automated statistical analysis pipeline has been developed to identify knockout strains with a significant change in the phenotype parameters. Annotation with biomedical ontologies allows biologists and clinicians to easily find mouse strains with phenotypic traits relevant to their research. Data integration with other resources will provide insights into mammalian gene function and human disease.
Stores 3D structure data representing anatomical concepts. BodyParts3D is a dictionary-type database constructed on the framework of a voxel human model for electromagnetic- dosimetry “TARO”. The database introduces a coordinate system to the human body structure. Each 3D data file is labeled with corresponding Foundation Model of Anatomy (FMA) concept IDs and indexed with their English synonyms as well as their Japanese equivalents.
Assists users in zebrafish inventory. ZeBase is a relational database for single or multi-laboratory environments. This resource is equipped with a variety of functions implemented in a cross-platform web interface, for zebrafish record keeping and searching. Users can access this application through standard web-browsers anywhere on a network or through an application.
Allows semantic discovery, phenotypic browsing and annotation of federated phenotypic images. PhIS contains about 117,900 images federated from four different data resources with 53,000 regions of interest (ROI) associated to anatomy or phenotype ontology term annotations. It supports the use of ontologies and builds on these to deliver good search experience and spatial reasoning. The database offers an annotation interface that allows users to semantically annotate an image.
Provides 3D morphological data sets and allows storage, organization, sharing and distribution of user’s 3D data. MorphoSource is a public repository and a virtual museum and archive aiming to provides access to the anatomy of specimens, including Primates and close relatives, Carnivores, Rodents and Insectivores, Ungulates, Pre-therian mammals and mammal-like reptiles, Archosaurs, Herps, Fishes and Invertebrates.
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