WES specifications

Unique identifier:
OMICS_14831
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ
Output format:
BAM
Computer skills:
Advanced
Requirements:
SAMtools, BAMtools, BEDtools, GATK, DBSNP, REFSEQ, PICARD
Name:
Whole Exome Sequencing Analysis Pipeline
Interface:
Command line interface
Input data:
The raw read data with well-calibrated base error estimates, the reference genome.
Output data:
The filtered mapped reads, the recalibrated and realigned BAM files, the paired read information, the predicted SNV calling.
Operating system:
Unix/Linux
Stability:
Stable
Maintained:
Yes

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

WES distribution

download

WES support

Maintainer

  • Peter Zandi <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Psychiatry and Behavioral Sciences, Johns Hopkins University, Baltimore, MD, USA; Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, Woodbury, NY, USA; Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA, USA; Watson School of Biological Science, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA

Funding source(s)

This project is supported by the NIH funding from R01MH087979, R01MH087992, and K01MH093809.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

star_border star_border star_border star_border star_border
star star star star star

1 user review

star_border star_border star_border star_border star_border
star star star star star
ehsan razmara's avatar image ehsan razmara's country flag

ehsan razmara

star_border star_border star_border star_border star_border
star star star star star

As you know the WES as considered the best tools for diagnostics and research aims, I used this website that offered here. it provide a good opportuanity for mr to increase my chance to better and distinctive analaysis.
I advice it for all peoples that seeking a good tool.

Related Tools