Wham specifications

Unique identifier:
OMICS_14824
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM
Biological technology:
Illumina
Programming languages:
C++
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
WHole-genome Alignment Metrics
Interface:
Command line interface
Input data:
The soft clipping information and supplementary alignments provided by mapping software.
Output data:
The identified putative SV breakpoints.
Operating system:
Unix/Linux
License:
MIT License
Version:
1.0.0
Requirements:
CMake, OpenMP

versioning

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Wham distribution

download

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Documentation

Maintainer

  • Mark Yandell <>

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Publications

Institution(s)

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT, USA; Utah Center for Genetic Discovery, University of Utah, Salt Lake City, UT, USA; Department of Biology, University of Utah, Salt Lake City, UT, USA

Funding source(s)

This work was supported by the NIH (R01GM104390, R01GM114514, R01GM115996, T32AI055434, T32GM07464, 1TL1TR001066, T32HD07491 and F32GM103077), the Burroughs Wellcome Fund (CABS1005281.01) and the NSF (CAREER DEB1149160).

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