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Whole-genome sequencing data analysis bioinformatics software tools

Whole genome sequencing (WGS) is the next-generation sequencing technology for a rapid and low cost determining of the full genomic sequence of an organism. Deep sequencing of genomes is important not only to improve our knowledge in life sciences and evolutionary biology but…

WGS analysis steps

Preprocessing & quality control

Data analysis

Annotation & interpretation

Data & workflows

File format conversion & manipulation

WGS analysis workflow

Click the icons of the schema to view tools

WGS analysis workflow schema

Experts in WGS analysis

They share and annotate bioinformatics tools

  • Catherine Breton's avatar image
    Catherine Breton
    Institut des Sciences de l’Evolution de Montpellier (ISEM), CNRS UMR 5554, University Montpellier II, Montpellier, France
  • Rory Miles's avatar image Rory Miles's country flag
    Rory Miles
    Liverpool School of Tropical Medicine
  • Jinjin Yu's avatar image Jinjin Yu's country flag

Most recent bioinformatics tools

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MAQGene
Desktop

MAQGene

Allows read alignment as well as single nucleotide polymorphism (SNP) detection…

Allows read alignment as well as single nucleotide polymorphism (SNP) detection and annotation. MAQGene launches the MAQ software and assembles a customized summary of the location and specific…

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Tarbomb…
Desktop

Tarbomb Disposal

Allows users to defuse tarbombs and to mine a tar archive. Tarbomb Disposal is…

Allows users to defuse tarbombs and to mine a tar archive. Tarbomb Disposal is a program that assists researchers in the extraction of file into a working directory.

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CAFTOOLS
Desktop

CAFTOOLS

Allows users to read, manipulate, and write CAF (Common Assembly Format) files.…

Allows users to read, manipulate, and write CAF (Common Assembly Format) files. CAFTOOLS is composed of: (1) Perl-5 libraries that allows users to create wrappers for software; and (2) ANSI-C…

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13amp
Desktop

13amp

Consists in a userspace translation virtual filesystem. 13amp allows users to…

Consists in a userspace translation virtual filesystem. 13amp allows users to manage their lab, office or datacenter. It permits conversion between CRAM and BAM.

Most popular analytical software

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SAMtools
Desktop

SAMtools

A suite of programs for interacting with high-throughput sequencing data. It…

A suite of programs for interacting with high-throughput sequencing data. It can manipulate alignments in the SAM/BAM/CRAM formats : reading, writing, editing, indexing, viewing and converting…

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Bowtie
Desktop

Bowtie

A short read aligner that aligns short DNA sequences (reads) to the human…

A short read aligner that aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its…

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HOMER
Desktop

HOMER Hypergeometric Optimization of Motif EnRichment

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER…

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of…

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SNPdryad
Web

SNPdryad

Predicts deleterious effect of amino acid substitutions occurred in human…

Predicts deleterious effect of amino acid substitutions occurred in human proteins. SNPdryad is a computational method that collects the orthologous protein sequences from other mammals and performs…

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