Whole-genome sequencing data analysis bioinformatics software tools

WGS analysis steps

Laboratory information and management systems | HTS

LIMS

34 tools

Utilities (next-generation sequencing)

Utilities

88 tools

WGS analysis workflow

Click the icons of the schema to view tools

WGS analysis workflow schema
Since 2005, whole-genome sequencing platforms have become widely available, reducing the cost of DNA sequencing by four orders of magnitude relative to Sanger sequencing (DNA sequencing costs; Metzker, 2010; Mardis, 2011). NGS technologies are being…

Whole-genome sequencing data analysis bioinformatics software tools

Most Recent Tools

G T A T C G C T A
GenomeTools
Desktop

GenomeTools

Follows the annotation graph approach, offering a unified graph-based…

Follows the annotation graph approach, offering a unified graph-based representation. GenomeTools is a software library and an associated software tools for developing bioinformatics software…

G T A T C G C T A
MO-FBA-FVA
Desktop

MO-FBA-FVA MultiObjective-FBA-FVA

Provides two multi-objective extensions of constraint-based models (CBMs) for…

Provides two multi-objective extensions of constraint-based models (CBMs) for modeling communities: multi-objective flux balance analysis (MO-FBA) and multi-objective flux variability analysis…

G T A T C G C T A
GraphMap
Desktop

GraphMap

Analyses nanopore sequencing reads. GraphMap progressively refines candidate…

Analyses nanopore sequencing reads. GraphMap progressively refines candidate alignments to robustly handle potentially high-error rates and a fast graph traversal to align long reads with speed and…

G T A T C G C T A
NanoBLASTer
Desktop

NanoBLASTer

Aligns long nanopore reads. NanoBLASTer includes several novel enhancements to…

Aligns long nanopore reads. NanoBLASTer includes several novel enhancements to maintain high sensitivity and high performance in the presence of high error rates that would otherwise limit the…

Most Popular Tools

G T A T C G C T A
SAMtools
Desktop

SAMtools

A suite of programs for interacting with high-throughput sequencing data. It…

A suite of programs for interacting with high-throughput sequencing data. It can manipulate alignments in the SAM/BAM/CRAM formats : reading, writing, editing, indexing, viewing and converting…

G T A T C G C T A
Bowtie
Desktop

Bowtie

An ultrafast, memory-efficient short read aligner. It aligns short DNA…

An ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a…

G T A T C G C T A
SNPdryad
Web

SNPdryad

A computational method that can predict deleterious effect of amino acid…

A computational method that can predict deleterious effect of amino acid substitutions occurred in human proteins. SNPdryad outperforms other leading algorithms in accurately predicting deleterious…

G T A T C G C T A
HOMER
Desktop

HOMER Hypergeometric Optimization of Motif EnRichment

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER…

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of…

Curators for WGS analysis

  • Catherine Breton's avatar image
    Catherine Breton
    Institut des Sciences de…

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.