Whole-genome sequencing data analysis bioinformatics software tools

Whole genome sequencing (WGS) is the next-generation sequencing technology for a rapid and low cost determining of the full genomic sequence of an organism. Deep sequencing of genomes is important not only to improve our knowledge in life sciences and evolutionary biology but…

WGS analysis steps

Preprocessing & quality control

Data analysis

Annotation & interpretation

File, data & workflows

WGS analysis workflow

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WGS analysis workflow schema

Whole-genome sequencing data analysis bioinformatics software tools

Most Recent Tools

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SV-AUTOPILOT
Desktop

SV-AUTOPILOT Structural Variation AUTOmated PIpeLine Optimization Tool

Standardizes the Structural Variation (SV) detection pipeline. SV-AUTOPILOT is…

Standardizes the Structural Variation (SV) detection pipeline. SV-AUTOPILOT is a pipeline that can be used on existing computing infrastructure in the form of a Virtual Machine (VM) Image. It…

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BPS
Desktop

BPS BreakPoint Surveyor

Examines breakpoint predictions, together with their associated structural…

Examines breakpoint predictions, together with their associated structural variation and gene context. BPS is a pipeline for integrating large, complex data sets with a scalable architecture…

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QReserve
Web

QReserve

Allows to collaborate and connect over equipment, services and other resources.…

Allows to collaborate and connect over equipment, services and other resources. QReserve is an online platform which permits users to manage their resources and equipment. This tool presents several…

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GateKeeper
Desktop

GateKeeper

Reduces the need of alignment verification in DNA read mapping. GateKeeper is a…

Reduces the need of alignment verification in DNA read mapping. GateKeeper is a hardware acceleration system for alignment filtering designed to utilize the large amounts of parallelism offered by…

Most Popular Tools

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SAMtools
Desktop

SAMtools

A suite of programs for interacting with high-throughput sequencing data. It…

A suite of programs for interacting with high-throughput sequencing data. It can manipulate alignments in the SAM/BAM/CRAM formats : reading, writing, editing, indexing, viewing and converting…

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Bowtie
Desktop

Bowtie

An ultrafast, memory-efficient short read aligner. It aligns short DNA…

An ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a…

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SNPdryad
Web

SNPdryad

A computational method that can predict deleterious effect of amino acid…

A computational method that can predict deleterious effect of amino acid substitutions occurred in human proteins. SNPdryad outperforms other leading algorithms in accurately predicting deleterious…

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HOMER
Desktop

HOMER Hypergeometric Optimization of Motif EnRichment

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER…

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of…

Curators for WGS analysis

  • Catherine Breton's avatar image
    Catherine Breton
    Institut des Sciences de…
  • Rory Miles's avatar image Rory Miles's country flag
    Rory Miles
    Liverpool School of Tropical…

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