WholeCellSimDB specifications


Unique identifier OMICS_12372
Name WholeCellSimDB
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse, Application programming interface
User data submission Allowed
Maintained Yes


  • person_outline WholeCellSimDB
  • person_outline Markus Covert

Additional information


Publications for WholeCellSimDB

WholeCellSimDB citation


Toward community standards and software for whole cell modeling

IEEE Trans Biomed Eng
PMCID: 5451320
PMID: 27305665
DOI: 10.1109/TBME.2016.2560762

[…] n tools will be used to estimate parameters and test models. (4) A multi-algorithm simulator will be used to conduct in silico experiments. (5) Simulation databases and visualization software such as WholeCellSimDB and WholeCellViz will be used to discover new biology by visualizing and analyzing in silico experiments.Together, this pipeline will enable more researchers to more easily build, manag […]

WholeCellSimDB institution(s)
Graduate Program in Biophysics, Stanford University, Stanford, CA, USA; Computer Science and Information Technology, University of Prince Edward Island, Charlottetown, PE, Canada; Department of Bioengineering, Stanford University, Stanford, CA, USA
WholeCellSimDB funding source(s)
Supported by a National Institutes of Health Director’s Pioneer Award (grant number 5DP1LM01150-05) and grant (number 1P50GM107615); an Allen Foundation Distinguished Investigator Award; a James S. McDonnell Postdoctoral Fellowship Award, and a National Science Foundational Graduate Research Fellowship.

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