WholePathwayScope statistics

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Associated diseases

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WholePathwayScope specifications


Unique identifier OMICS_22815
Name WholePathwayScope
Software type Application/Script
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data A set of gene-lists with associated quantitative values.
Input format CRI
Output data A Fisher exact test or whole pathway files.
Output format GTAN,WCSP,PSCP
Operating system Windows
Programming languages Visual Basic
Computer skills Medium
Stability Stable
Free trial Yes
Registration required Yes
Maintained Yes


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  • person_outline Ming Yi <>
  • person_outline Robert Stephens <>
  • person_outline Jay Horton <>
  • person_outline Jonathan Cohen <>
  • person_outline Helen Hobbs <>

Publication for WholePathwayScope

WholePathwayScope in publication

PMCID: 1464109
PMID: 16714445
DOI: 10.1093/nar/gkl354

[…] length, assuming a binomial distribution. p-values were corrected (bonferroni) for multiple comparison of 79 tissues., functional category enrichment analyses were performed using a software tool, wholepathwayscope (wps) (), developed at the abcc (nci-frederick, md). briefly, this analysis is based on fisher exact test for 2 × 2 contingency tables (gene list versus functional category) […]

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WholePathwayScope institution(s)
Advanced Biomedical Computing Center, National Cancer Institute-Frederick/SAIC-Frederick Inc., Frederick, MD, USA; McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center at Dallas, TX, USA; Departments of Internal Medicine and Molecular Genetics, University of Texas Southwestern Medical Center at Dallas, TX, USA; The Howard Hughes Medical Institute, University of Texas Southwestern Medical Center at Dallas, TX, USA
WholePathwayScope funding source(s)
Supported, in whole or in part, by Federal funds from the National Cancer Institute, National Institute of Health, under Contract No. NO1-CO- 12400 and The Howard Hughes Medical Institute and the National Institute of Health (ROI HL72304 and NHLBI Program for Genomic Applications UOI HL66880).

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