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WikiPathways

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An open, collaborative platform for capturing and disseminating models of biological pathways for data visualization and analysis. We provide updates on extensions and services to support pathway analysis and visualization via popular standalone tools, i.e. PathVisio and Cytoscape, web applications and common programming environments. We introduce the Quick Edit feature for pathway authors and curators, in addition to new means of publishing pathways and maintaining custom pathway collections to serve specific research topics and communities.

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WikiPathways classification

WikiPathways specifications

Interface:
Web user interface, Application programming interface
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Stability:
Stable

WikiPathways distribution

WikiPathways support

Maintainer

  • Marti Kutmon <>

Credits

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Publications

Institution(s)

Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, Netherlands; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, Netherlands; Gladstone Institutes, San Francisco, CA, CA, USA; Micelio, Antwerp, Belgium; Keshav Memorial Institute of Technology, Hyderabad, India

Funding source(s)

National Institute of General Medical Sciences via WikiPathways R01 [GM100039]; National Resource for Network Biology P41 [GM103504]. The Open PHACTS project is supported by the Innovative Medicines Initiative Joint Undertaking under grant agreement no. 115191, resources of which are composed of financial contribution from the European Union's Seventh Framework Programme (FP7/2007-2013) and EFPIA companies’ in kind contribution.

Link to literature

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