WiseScaffolder statistics

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Associated diseases

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WiseScaffolder specifications

Information


Unique identifier OMICS_09831
Name WiseScaffolder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Mate-pair data
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Laurence Garczarek <>

Information


Unique identifier OMICS_09831
Name WiseScaffolder
Interface Web user interface
Restrictions to use None
Input data Mate-pair data
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Laurence Garczarek <>

Publication for WiseScaffolder

WiseScaffolder in publication

PMCID: 5596377
PMID: 28898352
DOI: 10.1590/1678-4685-GMB-2016-0230

[…] different contigs using the relative-orientation information and the estimated insert-size. abyss (), sopra (), soapdenovo (), bambus 2 (), mip (), opera (), sspace (), sliq (), sga (), scarpa (), wisescaffolder () and scaffoldscaffolder () are examples of scaffolding tools based on paired-end information. more recently, the use of long-reads was also incorporated into scaffolding tools […]


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WiseScaffolder institution(s)
Sorbonne Universités, UPMC Univ. Paris 06, UMR 7144, Station Biologique, Roscoff, France; CNRS, UMR 7144 Adaptation and Diversity in the Marine Environment, Oceanic Plankton Group, Marine Phototrophic Prokaryotes team, Place Georges Teissier, Roscoff, France; CNRS, ABiMS Platform, Station Biologique, Place Georges Teissier, Roscoff, France
WiseScaffolder funding source(s)
This work was supported by the French “Agence Nationale de la Recherche” BioAdapt Program (SAMOSA, ANR-13-ADAP-0010), the European Union’s Seventh Framework Programmes FP7 MicroB3 (grant agreement 287589) and MaCuMBA (grant agreement 311975).

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