WMD specifications

Information


Unique identifier OMICS_11917
Name WMD
Alternative name Web MicroRNA Designer
Interface Web user interface
Restrictions to use None
Input data The gene(s) names, the target genes sequences, the minimum number of included targets, the user’s email
Input format FASTA
Output data A result page, a summary of the job, a list of amiRNA sequences, the hybridization energy of the miRNA to a perfectly-matching complement, the identifier of the target gene, the hybridization energy of the miRNA to the target site in the target gene
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Basic
Version 3.1
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Detlef Weigel <>

Information


Unique identifier OMICS_11917
Name WMD
Alternative name Web MicroRNA Designer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The gene(s) names, the target genes sequences, the minimum number of included targets.
Output data A summary of the job, a list of amiRNA sequences, the hybridization energy of the miRNA to a perfectly-matching complement, the identifier of the target gene, the hybridization energy of the miRNA to the target site in the target gene.
Operating system Unix/Linux
Programming languages Perl
Database management system MySQL, SQLite
License GNU General Public License version 3.0
Computer skills Advanced
Version 3.1
Stability Stable
Requirements XML::Smart, DBI, Data::Types, Error, XML::Dumper, C/C++ compiler, GenomeMapper, ViennaRNA, NCBI Blast
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Detlef Weigel <>

Publications for Web MicroRNA Designer

WMD institution(s)
Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany
WMD funding source(s)
This work is supported by grants from DFG-SFB 446 and European Community FP6 IP SIROCCO (contract LSHG-CT-2006-037900) and FP6 IP AGRON-OMICS (contract LSHG-CT-2006-037704), by an EMBO Long-Term Fellowship, and by the Max Planck Society.

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